removing columns from phylip infiles

ard jonker a337ard at horus.sara.nl
Thu Nov 9 09:18:48 EST 1995


In article <47l8ns$441 at lyra.csx.cam.ac.uk>, Jeremy Packer
<jclp100 at mole.bio.cam.ac.uk> wrote:

> I often encounter the situation where I want to use only part of a 
> sequence alignment as a phylip infile. (for example to exclude all 
> postions where there is a gap in any of the sequences or where the 
> alignment appears uncertain). 
...
>We are mainly using Macs, but also have access to PCs 
> and UNIX( via telnet).

<ftp://ftp.funet.fi//pub/sci/molbio/iubiomolbio/readseq/mac-bin/readseq.hqx.gz>

(160 KB) will do the trick. Otherwise Alpha will, if you hold the option
key when you select columns in your text. Finally, SeqApp seems to do what
you want.



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