Paup informative sites?

Hassan Badrane hbadrane at pasteur.fr
Thu Nov 23 05:10:20 EST 1995


Hello,
Another programme can count the variable sites, the informatives sites etc...
in a given alignement. it's MEGA which run on PCs.

     10. MEGA (Molecular Evolutionary Genetic Analysis) is due to  be  released
at the beginning of 1993 by Sudhir Kumar, Koichiro Tamura, and Masatoshi Nei of
the Institute of Molecular Evolutionary Genetics, 328 Mueller Lab, Pennsylvania
State  University,  University  Park, Pennsylvania 16802, U.S.A.  It will be an
executable program for PCDOS machines, and will be  menu-driven  with  context-
sensitive  help.  It will analyze data from DNA, RNA and protein sequences, and
distance matrices produced from other kinds of data as well.  It  will  include
the  Neighbor-Joining  method  distance  matrix  method,  a  branch  and  bound
parsimony method, and bootstrapping.  It will also plot trees on many kinds  of
printers.   The  program will be provided free of charge if you send one 1.2 Mb
5.25-inch or 1.44 Mb 3.5-inch floppy diskette, and will be sent as soon  as  it
is  available.   Inquiries  can  also  be  made  by mail to M. Nei at the above
address or by electronic mail  to  nxm2 at psuvm  (Bitnet)  or  nxm2 at psuvm.psu.edu
(Internet).

good luck
Hassan




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