Sequence alignments -- where to chop?
bjadams at CRCVMS.UNL.EDU
Mon Apr 22 09:47:53 EST 1996
>In article <firstname.lastname@example.org>,
>bjadams at CRCVMS.UNL.EDU (Byron Adams) writes:
>> Cutting the gap out might violate some of the assumptions
>> associated with certain types of analyses, such as statistical or distance
>I could be wrong but ....
>as long as you cut the same section out of all the sequences, you actually
>protect yourself from these "violations". The classic violation is to
>break the so called triangle inequality.
I could be wrong but .... I think you're right.
Byron J. Adams
University of Nebraska
406 Plant Sciences Hall
P.O. Box 830722
Lincoln, NE 68583-0722
(402) 472-2858 "Wilderness, once we have given
fax (402) 472-2853 it up, is beyond our
bjadams at crcvms.unl.edu reconstruction."
badams at unlgrad1.unl.edu -Wallace Stegner
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