Protml

Sophia Kossida sophia.kossida at merton.oxford.ac.uk
Tue Apr 23 09:28:28 EST 1996


Hello, 

        I tried to use protml version2.2 with a constraint tree file. My
input file looks like the one below:


14 852 S
MycTub
RAKPTLMLLDGNSLAFRAFYALPAENFKGGLTTNAVYGFTAMLINLLRDEAPTHIAAAFD
VSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLAT
QAENEYRVLVVTGDRDALQLVSDDVTVLYPRKGTRFTEAVVEKYGLTPRQYPDFAALRGD
PSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVRNRELTDL
.......
ThermTherm
......
......
1
((MycTub,ThermTherm,BacSter,StrePneu,Ecoli,ThermAqua,Scer,ThermFlav,MIP1,Hinfl),
(T5,T7,Spo1,Spo2));


I went for the following command:
%     -jf -s -v -i a.phy

The semi-automatic mode, -s, didn't take into account the bifurcation as I
was expecting it to do and as I understand the programme is supposed to
do.

Any suggestions?
Thank you in advance

Sophia

=====================================================
Sophia Kossida
Merton College
Oxford OX1 4JD
England
e-mail:  sophia.kossida at merton.oxford.ac.uk
tel :    (44) (0) 1865 271263
fax :    (44) (0) 1865 310447
URL :    http://sable.ox.ac.uk/~mert0223
=====================================================

-- 
Sophia Kossida
Merton College
Oxford OX1 4JD
England
e-mail:  sophia.kossida at merton.oxford.ac.uk
tel :    (44) (0) 1865 271263
fax :    (44) (0) 1865 310447
URL :    http://sable.ox.ac.uk/~mert0223



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