Use of secondary structure in alignments

Marcos de la Pena pena at
Wed May 22 11:16:52 EST 1996

Hi Diane:

 Secondary structure studies on single stranded RNA phages is one of the 
most powerful techniques in resolving phylogenies of these viruses (or 
at least I believe that).

 I would recommend you a nice paper about that:

 Beekwilder M.J. et al, Journal of Molecular Biology, 1995, 247: 903-917 

I hope this helps you,


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