Max Like for Amino Acid seqs

[Joe Felsenstein]

In article <v01530501ae65fb92b53e@[129.93.98.75]>,
Byron Adams <bjadams at CRCVMS.UNL.EDU> wrote:
>        I'm interested in finding a Maximum Liklihood program for
>reconstructing phylogeny using amino acid sequences- any suggestions?

Two programs exist to do it.  Ziheng Yang's PAML and Adachi and Hasegawa's
MOLPHY package.  You can find out where to get them (both are free and
available over The Network) on the Other Phylogeny Programs page of my
PHYLIP Web pages:

http://evolution.genetics.washington.edu/phylip/software.html

-- 
Joe Felsenstein         joe at genetics.washington.edu     (IP No. 128.95.12.41)
 Dept. of Genetics, Univ. of Washington, Box 357360, Seattle, WA 98195-7360 USA