protein evolution program

Joe Felsenstein joe at evolution.genetics.washington.edu
Tue Oct 7 11:46:23 EST 1997


In article <6135m4$mk5 at net.bio.net>,
Gustavo Parisi  <gustavo at unq.edu.ar> wrote:
>I would be very grateful if anybody  knows the existence of any program
>to perform protein evolution simulations starting from a given protein
>sequence.

One program to try would be PSeq-Gen by Nick Grassly and Andrew Rambaut.
It is available from the web site:
   http://evolve.zoo.ox.ac.uk/PSeq-Gen/PSeq-Gen.html
It can handle protein sequence evolution on a given tree, with site-to-site
variation included.

Other simulation programs will be found listed at my phylogeny programs
web site:
   http://evolution.genetics.washington.edu/phylip/software.html

-- 
Joe Felsenstein         joe at genetics.washington.edu
 Dept. of Genetics, Univ. of Washington, Box 357360, Seattle, WA 98195-7360 USA




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