informative sites/bootstrap

Peter Schuchert schuchert at
Mon May 4 11:12:23 EST 1998

Please excuse this perhaps naive question. For a 
bootstrap analysis, do you use all sites of an sequence
alignement or only the informative ones? I checked through
several papers on molecular phylogenies, but found no details
in them. Or more general, is it preferrable to work with the
informative sites only for all analyses?


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