Nucleotide sequence simulation

Catherine Letondal letondal at electre.pasteur.fr
Wed Jul 4 02:06:14 EST 2001


In article <9ht5ks$6g1$1 at mercury.hgmp.mrc.ac.uk>, Patrick Brunner <patrickcbrunner at netscape.net> writes:
>Colleagues
>
>I am looking for a Win or Mac program that will simulate/generate nucleotid=
>e sequences. The program should create new data sets starting from given al=
>igned sequences according to current evolutionary models of nucleotide subs=
>titutions (e.g. K2P, HKY etc.). Thus, nucleotide frequencies, TS/TV ratios =
>or gamma/codon rate heterogeneity and other parameters should be automatica=
>lly determined from the originally given data set or manually changeable.=
>=20
>
>Any pointers to other programs than those already listed on Joe Felsenstein=
>s web-page are highly appreciated.

Maybe:

http://evolve.zoo.ox.ac.uk/software/Seq-Gen/main.html
http://bioweb/seqanal/interfaces/seqgen.html

>
>Thanks / pcb
>
>--
>------Patrick C. Brunner -------
>
>Swiss Federal Research Station
>Schloss, Lab. 4
>CH-8820 Waedenswil
>Switzerland
>
>
>phone: =A0+41 (1) 783 6331
>fax: =A0 =A0+41 (1) 783 6434
>e-mail: patrickcbrunner at netscape.net
>


-- 
Catherine Letondal -- Pasteur Institute Computing Center





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