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</head><body><p class="default-style">Dear colleagues,<br> <br>This course might be of interest for the members of this list:<strong> MANIPULATION OF NGS DATA FOR GENOMIC AND POPULATION GENETICS ANALYSES</strong>.</p><p class="default-style">Date: May 14th-17th, 2018, Barcelona (Spain).</p><p class="default-style">PLACE: Capellades, Barcelona.</p><p class="default-style">INSTRUCTORS: Dr. Fran&#231;ois Sabot (Institute of Research for Development, France) and Dr. Christine Tranchant-Dubreuil (Institute of Research for Development, France)</p><p class="default-style">PROGRAM:</p><p class="default-style"><br>- Monday, May 14th, 2018.</p><p class="default-style">Introduction to NGS sequencing platforms.</p><p class="default-style">Introduction to basic command lines.</p><p class="default-style">Basic raw data manipulations (counting sequences, listing files).</p><p class="default-style"><br>- Tuesday, May 15th, 2018.</p><p class="default-style">Raw data QC &#38; Cleaning.</p><p class="default-style">Introduction to TOGGLe, a NGS pipeline framework.</p><p class="default-style">Mapping: principle, tools, execution.</p><p class="default-style">Mapping: cleaning, data control, realigning, duplicates marking.</p><p class="default-style">- Wednesday, May 16th, 2018.</p><p class="default-style">SNP calling: raw calling, cleaning calling, filtering.</p><p class="default-style">VCF manipulations: filtering on MAF, heterozygosity&#8230;</p><p class="default-style">Impact of SNPs on genes.</p><p class="default-style">Population genomics using sNMF.</p><p class="default-style"><br>- Thursday, May 17th, 2018.</p><p class="default-style">Context-based analyses.</p><p class="default-style">Piping large scale analyses for multiple samples using TOGGLe.</p><p class="default-style">Testing new tools and different conditions to answer different biological questions.</p><p class="default-style">Questions.</p><p class="default-style">With best regards</p><p class="default-style">Sole</p><div class="io-ox-signature"><p>Soledad De Esteban-Trivigno,PhD.<br>Scientific&#160;Director<br>Transmitting Science<br><a href="http://www.transmittingscience.org/">www.transmittingscience.org</a><br></p></div></body></html>
 

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