profile-sequence alignment

Geoff Barton gjb at
Tue Mar 26 04:53:24 EST 1996

Gustavo Parisi wrote:
> Does anyone know where can I obtain a source code to make an alignment
> between a protein sequence and a profile ( as defined by Gribskov) ?.
>  Any information would be of help!
> gustavo

The AMPS package.  See the README file on our ftp site.
Not Gribskov's profiles, but my version of the same thing.


Geoffrey J. Barton, Laboratory of Molecular Biophysics, University of
Rex Richards Building, South Parks Road, Oxford OX1 3QU, U.K.
mailto:gjb at, Tel: +44 1865 275368, Fax: +44 1865 510454,,

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