profile-sequence alignment

[Geoff Barton]

Gustavo Parisi wrote:
> 
> Does anyone know where can I obtain a source code to make an alignment
> between a protein sequence and a profile ( as defined by Gribskov) ?.
>  Any information would be of help!
> 
> gustavo

The AMPS package.  See the README file on our ftp site.
Not Gribskov's profiles, but my version of the same thing.

Geoff.

-- 
Geoffrey J. Barton, Laboratory of Molecular Biophysics, University of
Oxford, 
Rex Richards Building, South Parks Road, Oxford OX1 3QU, U.K.
mailto:gjb at bioch.ox.ac.uk, Tel: +44 1865 275368, Fax: +44 1865 510454, 
ftp://geoff.biop.ox.ac.uk, http://geoff.biop.ox.ac.uk