Hydrophobic surface calculation

Zhan-yang Zhu zhu at gallery.stanford.edu
Tue Oct 22 12:44:31 EST 1996


Juergen Pleiss wrote:
> 
Try to contact Andrej Sali at Rockefeller University by 
----------------------------------------
     Name: Sali, Andrej
   E-mail: sali at rockvax.rockefeller.edu
----------------------------------------
He has the program to do what you want, I think.

Good luck!

> Dear colleagues,
> 
> we are searching for a program which calculates the total hydrophobic,
> solvent accessible surface of a protein or a small molecule.
> It should read in a PDB file and output the surface area in Angstrom**2,
> which is hydrophobic _and_ solvent accessible (hydrophobicity defined by
> any of the hydrophobicity scales, solvent defined by a probe radius).
> Ideally, the program uses a user editable parameter file, which
> equivalences atom names (as given in the PDB file), VdW radius and
> hydrophobicity index, so that the user can add atoms to it.
> I would be glad if you could point me to such a program.
> 
> Thank you for your help,
> Juergen Pleiss
> 
> ================================================================================
> 
> Dr.Juergen Pleiss
> Institute of Technical Biochemistry
> University of Stuttgart          Email:jpleiss at tebio1.biologie.uni-stuttgart.de
> Allmandring 31                   Phone:(+49)-711-685-3191
> D-70569 Stuttgart, Germany       Fax:  (+49)-711-685-3196
> W3 home page:  http://www.itb.uni-stuttgart.de:8080/

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