protein alignment

Gustavo Parisi gustavo at
Fri Nov 7 09:09:49 EST 1997

I have the structural alignment between two distant proteins sequences.
I want to align this alignment with the rest of the sequences belonging
to both families. I have tried to use the profile alignment option in
Clustalv program, but introduces deletions in the sequence of the first
profile (bug?).
Does anyone know any program to make this sort of alignment?
Thank you in advance,

gustavo parisi

Gustavo Parisi
Unidad de Fisicoquimica
Universidad Nacional de Quilmes
Avenida Calchaqui Km. 23.500
1888 Florencio Varela, Buenos Aires

E-mail:gustavo at
Fax: ++ 54-1-275 7176
Tel: ++54-1-275-7535/8537

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