DNA simulation with reduced phosphate charge
Wen-shyong Tzou
wstzou at GATE.SINICA.EDU.TW
Tue Oct 13 19:34:17 EST 1998
Dear Modellers:
I am doing a simulation of DNA. I am going to use solvent
approximation (dielectric constant epsilon = r) and reduced charge of
phosphate group. For the reduced charge of phosphate, I can only find a paper
titled "NMR studies and restrained-molecular-dynamics calculations of a long
A+T-rich stretch in DNA. Effects of phosphate charge and solvent
approximations" appearing in Eur. J. Biochem vol 234, p832-842 (1995). In
that paper, phosphate group charge is reduced from -1.2e to -0.32e. Can
somebody suggest me on the theoretic basis of charge reduction or similar
readings about this method ?
Thank you very much for your help
Wen-Shyong Tzou
| Wen-Shyong Tzou
| /~~\ Ph.D. candidate
| * / / Laboratory for Computer Modeling of Biomolecules
/ / \ Institute of Biomedical Sciences
/ / \ Academia Sinica,Nankang
/ * / | Taipei, Taiwan, R.O.C.
/ / | Address: P.O. Box 1-99, Nankang, Taipei, Taiwan
/ | /
/ <*> | | e-mail: wstzou at sinica.edu.tw
| \ / Phone: (886)-2-27899033
/ \ / Fax: (886)-2-27887641
_/ | /
|~|
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