RMS pairwise calculation

Simon Andrews simon.andrews at bbsrc.ac.uk
Mon Aug 7 06:12:08 EST 2000



Mario Garcia wrote:
> 
> Dear all:
> We have 3 superimposed protein conformations and we would need to
> calculate the RMS deviation between pairs of residues. Any idea?
> Thank you so much in advance for the reply.

Swiss PDB viewer (www.expasy.ch/spdbv) can certainly do this.  Simply
select the residues you wish to compare, then use Tools -> Calculate
RMS.  I imagine most modelling programs have a similar facility.

Simon.






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