From sarwat_bqau from yahoo.co.uk  Mon Mar 10 14:52:25 2008
From: sarwat_bqau from yahoo.co.uk (Sarwat Ahmad)
Date: Mon Mar 10 14:55:59 2008
Subject: [Molecular-modelling] Protein in a membrane
Message-ID: <877943.46580.qm@web27913.mail.ukl.yahoo.com>

I have one homology model and its in membrane. Can some body tell me how can i sepaate the protein out for a membrane. The whole protein and membrane is in box and filled with the water as well.
  I shall be very thankful to you for your kind reply.
  with best regards

       
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From jprudhomme from healthtech.com  Fri Mar 14 08:49:37 2008
From: jprudhomme from healthtech.com (JPrudhomme)
Date: Fri Mar 14 09:51:19 2008
Subject: [Molecular-modelling] Structure-Based Drug Design (Conference)
Message-ID: <2985488d-58ff-47c1-82de-8239b8287ba5@d62g2000hsf.googlegroups.com>

Dear Colleagues,

You can participate at CHI's Structure-Based Drug Design conference on
June 25-27, 2008 at the World Trade Center in Boston, MA.

View full details and register at:  www.healthtech.com/sbd/overview.aspx

Presentations by:
AILERON Therapeutics
ARIAD Pharmaceuticals Inc.
AstraZeneca R&D M?lndal
Bristol-Myers Squibb
California Institute of Technology
Centocor Research and Development
Chemical Computing Group Inc.
Elan Pharmaceuticals
Harvard Medical School
Locus Pharmaceuticals
Lundbeck Research (Denmark) Merck Research Laboratories
National Center for Scientifi c Research
(CNRS)
NIH, NIDDK
Novartis
OSI Pharmaceuticals
Pfizer Global Research and Development
Schrodinger, Inc.
SGX Pharmaceuticals
SimBioSys
University of York
Vernalis

Please let me know if you have any questions or if you would like a
PDF brochure emailed to you.

Regards,
Jim Prudhomme
Cambridge Healthtech Institute
jprudhomme@healthtech.com
From markII from came.sbg.ac.at  Tue Mar 25 09:39:25 2008
From: markII from came.sbg.ac.at (Markus Wiederstein)
Date: Tue Mar 25 12:36:43 2008
Subject: [Molecular-modelling] TopMatch protein structure alignment and
	superposition web service
Message-ID: <mailman.1207.1206462962.2451.comp-bio@net.bio.net>

We are pleased to announce the release of TopMatch-web, a public web  
service for the alignment and superposition of protein structures and the  
instant visualization of structural similiarities.

We believe that TopMatch is an exceptionally effective, accurate, and  
enjoyable program for the investigation of protein structure similarities.

For further information and instructive examples see
Sippl & Wiederstein (2008)
A Note on Difficult Structure Alignment Problems.
Bioinformatics 24, pp. 426-427

TopMatch-web is available as a public web service at  
http://topmatch.services.came.sbg.ac.at.

Enjoy!

The TopMatch Team
Center of Applied Molecular Engineering
University of Salzburg
Austria