(none)

arnold at BSCR.UGA.EDU arnold at BSCR.UGA.EDU
Tue Jun 18 12:47:14 EST 1996


                                                   Aspergillus nidulans Chromosome VI - Version 2 - Aligned with Genetic Map - 77 Probe Pools
                                                                                        MINIMAL MAP
                                                                                    Estimated Coverage = 80%
                                                                                    Estimated Physical Size = 2800 kb
KB            LOCUS     CLONE/CHR         CLONE                10         20        30        40        50         60         70      
                        HYBR.             NAME         .........|...|......|.........|.........|.........||.........|.........||.......
                        12345678                       --------------------------------------------------------------------------------
|-0           CEN            H          * SW31HO8      1............|.....................................|...................|........
|             cen       HHHHHMMH          OWO8CO7      11...........|.......................1.............|...................|........
|-50                         M          * SL27BO5      .1...........|.....................................|...................|1.......
|                       MLHMHL            RWO2F1O      111..........|..................................1..|...................|........
|-100                        H          * SL3OCO1      ..1..........|.....................................|...................|........
|                            H            SW13HO9      .111.........|....................................1|...................|........
|-150                        M          * SWO1G11      ...1.........|.....................................|...................|........
|                            H            SW12AO6      ...11........|.....................................|...................|........
|-200                        M          * SWO8CO1      ....1........|.....................................|...................|........
|                            L            SW1OCO8      ...111.......|.....................................|...................|........
|-250                        M          * SW23FO3      .....1.......|.....................................|...................|........
|                        HLHMHL           RW16EO6      .....11......|...1...........11.....1......1.1.....|..1.........1......|.1......
|-300                        M          * SWO7EO1      ......1......|.....................................|...................|........
|                            M            SWO7HO9      ......11.....|.....................................|...................|........
|-350                        M          * SW21AO8      .......1.....|.....................................|...................|........
|                        HH HMH           RL12DO5      .......11....|.....................................|...................|........
|-400                        H          * SW26GO1      ........1....|.....................................|...................|........
|                            M            SW3OGO9      ........11...|.....................................|...................|........
|                            H          * SWO6GO8      .........1...|.....................................|...................|........
|-450                        M          * SW14FO6      ..........1..|.....................................|...................|........
|                            M            SWO9BO2      ..........11.|.....................................|...................|........
|-500 fast cleistothecia     H          * SWO6GO6      ...........1.|.....................................|...................|........
|                        LLMHLML          RWO2DO5      1..........11|.....................................|...................|......1.
|-550                        M          * SW24E11      ............1|.....................................|...................|........
                                                       --------------------------------------------------------------------------------
|-0                          H H          RL11DO4      .............|1....................................|...................|........
|                           MH            RL12EO6      .............|11.1.................................|...................|........
|-50                         H          * SL13BO9      .............|.1...................................|...................|........
|                            H            SW12BO5      .............|.11..................................|...................|........
|                            H          * SL17DO9      .............|..11.................................|...................|........
|-100                        H          * SL17HO9      .............|...1.................................|...................|........
|                            H            SL11BO2      .............|.1.11................................|...................|........
|-150       phytochrome      M          * SL27GO5      .............|....1................................|...................|........
|             cen       HMHHHMMH          OW14AO2      1............|....111..........11.................1|...................|........
|-200       orlA,(apsB)      H          * SW14GO1      .............|.....1...............................|...................|........
|                          MHM L          RLO5BO7      .............|.....111........1........1...........|.........1.........|....1.1.
|-250                        M          * SL21G11      .....1.......|......1..............................|...................|........
|                         MM M            RL18AO9      .............|......11....................11.......|...................|........
|                         H  L            RL18BO7      .............|.......11............................|...................|........
|-300                        M          * SW22C11      .............|........1............................|...................|........
|                            M            SW14DO8      .............|........11...........................|...........1.......|........
|-350                        H          * SW23EO7      .............|.........1...........................|...................|........
|                       M   MMML          RL16B12      .............|.........11..........................|...................|........
|-400                        M          * SW25BO2      .............|..........1..........................|...................|........
|                            H            SLO3EO8      .............|..........11.........................|...................|1.......
|-450                        H          * SL15C12      .............|...........1.........................|...................|........
|                           HM            RL29B12      .............|...........11........................|...................|........
|-500                        M          * SL29AO5      .............|............1........................|...................|........
|                           LM            RL11BO6      .............|............11.......................|...................|.1......
|-550                        M          * SW24BO5      .............|.............1.......................|...................|........
|                            M            SW21BO7      .............|.............111.....................|...................|........
|                            H          * SW24FO3      .............|..............1......................|...................|........
|-600                        M          * SW24DO9      .............|..............11.....................|...................|........
|                         LH M            RWO6F1O      .............|...............11....................|...............1...|........
|-650                        H          * SL28CO1      .............|................1....................|...................|........
|                            M            SWO5CO8      .............|................11...................|...................|.......1
|-700                        H          * SL23GO1      .............|.................1...................|...................|........
|             cen       HMHHHMMH          OWO2CO4      1............|.................11............1.....|...................|........
|-750                        M          * SL27EO8      .............|..................11.................|...................|........
|                           MM            RW21EO8      .............|...................1.................|...................|........
|                        M   L            RLO3AO3      .............|...................11................|...................|........
|                            M          * SWO1H1O      .............|....................1................|...................|........
|-800                        H          * SW28GO6      .............|.....................1...............|...................|........
|                            H            SL11AO9      .............|.....................1111...1........|...................|........
|-850                        M          * SW12DO3      .............|......................1..............|...................|........
|                           MM            RLO8BO7      .............|......................11.............|...................|........
|                            M          * SW27FO5      .............|.......................11............|...................|........
|                            M          * SWO8BO7      .............|........................1............|...................|........
|-900                        H          * SL15BO8      .............|........................11...........|...................|........
|                            H            SW13GO9      .111.........|..1......................11......1...|.........1.........|....1...
|                            H          * SLO3AO6      .............|..........................11.........|...................|........
|-950                        H          * SL18FO9      .............|...........................1.........|...................|........
|                         H  H            RW3OAO3      .............|...........................11........|...................|........
|-1000        (nimP)         M          * SW3ODO1      .............|............................1........|...................|........
|                        MHMLHMM          RW12F1O      .............|............................11.......|...................|........
|                            M          * SL24E12      .............|.............................11......|...................|........
|-1050                       H          * SW31H11      .............|..............................1......|...................|........
|                            H            SL25F12      .............|..............................11.....|...................|........
|                            M          * SL23HO3      .............|...............................1.....|...................|........
|-1100        (bimC)         H          * SL22DO5      .............|...............................11....|...................|........
|                       MMH MMLM          RW13A1O      ..11.........|.........................1......11...|...................|........
|-1150                       H          * SL2OB1O      .....1.......|.................................1...|...................|........
|                            M            SWO5GO3      .............|.................................11..|...................|........
|-1200                       M          * SL27FO9      .............|......1...........................1..|...................|........
|                          M M            RW28AO8      .............|..................................111|...................|........
|             (hymA)         M          * SW29G12      .............|...................................1.|...................|........
|-1250                       M          * SW31C11      .............|...................................11|...................|........
|                            M            SL15E1O      .............|....................................1|...................|........
                                                       --------------------------------------------------------------------------------
|-0                     M    L            RL1OD12      .............|................................1....|1........1.........|........
|-50                         M          * SL27C1O      .............|.....................................|11.................|........
|                            M            SW25AO4      .............|.....................................|111................|........
|-100                        M          * SWO8BO3      .............|.....................................|.1.................|........
|                            M            SW16CO3      .............|...1........................1........|.11......1.....1...|........
|                            M          * SL22AO2      .............|.....................................|..1................|........
|-150                        M          * SWO7EO6      .............|.....................................|..1................|........
|                            M            SW31EO5      .............|.....................................|..11...............|........
|-200                        M          * SWO7BO5      .............|.....................................|..111..............|........
|                            H            SW25DO6      .............|.....................................|...111.............|........
|                            H          * SL1OFO8      .............|.....................................|....1..............|........
|-250                        H          * SL17AO8      .............|.....................................|....11.............|........
|             cen       MHMMMHHM          OW12A11      .............|.......1.....................1.......|...1.11............|......1.
|-300                        H          * SL27G12      .............|.....................................|......1............|........
|                         LL M            RWO3EO2      ..1..........|.....................................|......11...........|........
|-350                        H          * SW29E11      .............|.....................................|.......1...........|........
|                            ML           RW17HO3      .............|............................1........|.......11..........|........
|                            H          * SL21B12      .............|.....................................|........1..........|........
|-400                        H          * SL1OG1O      .............|.....................................|........11.........|........
|                            H            SL29DO1      .............|.....................................|..1......11........|........
|-450                        L          * SW22GO8      .............|.....................................|..........1........|........
|                       HMHHHHH           RL11C12      1............|....................................1|..........11.......|........
|-500         (H3)           M          * SWO2EO6      .............|.....................................|...........1.......|........
|                           HL            RL1ODO6      .............|.....................................|...........11......|........
|-550                        M          * SWO9DO7      .............|.....................................|............1......|........
|                            M            SW26DO6      .............|.....................................|............11.....|........
|-600                        H          * SW21DO5      .............|.....................................|.............1.....|........
|                       L M LM            RW16DO9      .......1.....|...........1.........................|.............11....|........
|                            M          * SW16D1O      .............|.....................................|..............111..|........
|                            H          * SLO9G12      .............|.....................................|...............1...|........
|                            M          * SW21CO9      .............|.....................................|...............11..|........
|-650                        M          * SW23DO9      .............|.....................................|................11.|........
|                           MM M          RLO4GO2      .............|.....................................|.................11|........
|-700                        M          * SWO1DO4      .............|.....................................|..................1|........
                                                       --------------------------------------------------------------------------------
|-0                          L          * SW3OFO3      .............|.....................................|...................|1.......
|                            MLH          RLO4DO4      .............|.....................................|...................|11......
|-50                         M          * SW18DO4      .............|.....................................|...................|.1......
|                           LL            RL29DO7-d    .............|.1....11.............................|...................|.111....
|-100                        H          * SWO2AO8      .............|.....................................|...................|..1.....
|                           LL            RL29DO7      .............|.1....11.............................|...................|.111....
|-150                        H          * SL21CO6      .............|.....................................|...................|...1....
|                         LH M            RW12DO8      .............|.....................................|...................|...11...
|-200         bimE           H          * SLO8C12      .............|.....................................|...................|....1...
|                            H            SL15F11      .............|.....................................|...................|....11..
|-250                        M          * SWO6DO5      .............|.....................................|...................|.....1..
|                           HM H          RL29EO8      ............1|.........1...........................|...................|.....111
|                       MLMMHMMM          OL18A11      1............|.....................................|...................|......11
|-300 npeA,T(VI,VIII)        L          * SW3OE1O      .............|.....................................|...................|.......1
                                                       --------------------------------------------------------------------------------
In the first column a scale in kilobases (kb) is provided for the chromosome walk.  The chromosome walk above is aligned with the genetic map. 

In the second column Genetic loci assigned to cosmids are found.  Cosmids, which hybridize to another complementing
clone or to a clone, which hybridizes to a gene probe, are given in parantheses.  The parantheses
around the locus name implies that the cosmid listed by name in the same row has not been
shown to complement directly a mutation at the genetic locus or hybridize directly to a gene probe.
CEN denotes the predicted location of the centromere, while cen in lowercase denotes a centromeric repeat.

In the third column hybridization of the clone to each chromosome is scored as high (H), medium (M), or low (L).

In the fourth column the star (*) denotes that the cosmid was used as a probe.

In the fifth column is the clone name.


NOTES ON THE PHYSICAL MAP:

T(VI,VIII): The translocation break is described in Geiser, Arnold, and Timberlake (1996), Current Genetics 29: 293-300



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