uptodate codon usage tables

Guest2 Yuzo Minobe minobe at RTCS0.RIKEN.GO.JP
Fri Feb 19 23:51:53 EST 1993


Re:
 
m BIOSCI-REQUEST at net.bio.net Fri Feb 19 08:45:06 1993
  4813  To: plant-biology at net.bio.net
  4814  Subject: Re: E.coli codon usage
  4815  Sender: news at usenet.ucs.indiana.edu (USENET News System)
  4816  Nntp-Posting-Host: chipmunk.bio.indiana.edu
In article <2A50C086 at coursmtp.nrc.ca> pbonham at pbi.lan.nrc.ca writes:
  4819  >Does anyone out there have a computed version of E.coli preferred codon
 usage
  4823
  4824  via Internet Gopher or anonymous ftp to ftp.bio.indiana.edu,
  4825  look in folder  /molbio/codon for eco.cod
  4830  681 genes found in GenBank 63.
  4832   Produced by J. Michael Cherry (cherry at frodo.mgh.harvard.edu) with the
  4833   GCG program CodonFrequency

I found a codon table of GenBank vs. 69  (15 Sept. 1992)
by ftp from  ftp.nig.ac.jp, in
directory pub/codon. Several tables are there,both plants and
other organisms. Table format is that of Wada et al. 1990. 
Codon usage tabulated from the GENBANK... Nucl. acids Res. 
19 (supplement):1981-1986.
Also available via gopher (National Institute of Genetics / 
DDBJ.
Hope this helps.
.
Dr. Ilkka Havukkala
Informatics & 
Editorial Office of Rice Genome newsletter
Rice Genome Research Program (RGP)
National Institute of Agrobiological Resources
2-1-2, Kannondai, Tsukuba
Ibaraki 305, Japan
fax +81-298-38-7468
e-mail: minobe at rtcs0.riken.go.jp




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