Help wanted: alignment program for proteins

T.H.L. Murcott mbthm at s-crim1.dl.ac.uk
Mon Dec 14 09:01:33 EST 1992


In article <92346.200424U53077 at uicvm.uic.edu> Dong Li 312-996-0509 <U53077 at uicvm.uic.edu> writes:
>Dear netters,
>
>I am looking for a better alignment program for the alignments of
>60 different proteins at same time.
>The program I am using now can line up only
>16 proteins at same time, and I have to divide all 60 proteins into
>4 groups to line them up separately, then line the 4 groups up by
>hands. It is laborious and easy to make mistakes.
>
>I would be very grateful if you provide any information about it
>(or just tell me the site and dir. name so that I can FTP it.)
>
>Thank you very much for attention.
>
>*************************************************************************
>With malice toward none, with charity for all..........  Abraham Lincoln
>-------------------------------------------------------------------------
>        Dong Li   Telephone: (312) 996-0509    Fax: (312) 413-2435
>     Internet: u53077 at uicvm.uic.edu     Bitnet: u53077 at uicvm.bitnet
>Dept. Biological Sciences, Univ. Illinois at Chicago, Chicago, IL 60680
>*************************************************************************

I have had alot of success with clustal V
 (five) which can certainly cope with more than 16 sequences at a time.  It is
available by anonymous ftp from the major molecular biology ftp sites.  I would
go and find out the details of sitename and directory but I am a novice at UNIX
and rn and am pretty sure that I would not be able to get back to your message
again to reply!!

Good hunting

Toby "I dont understand unix but I can spell potato".

Toby Murcott		Murcott at uk.ac.bristol.bsa
Dept. of Biochemistry
University of Bristol
UK.



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