searching_PDB_files

Rob Harper harper at convex.csc.FI
Fri Jul 9 02:22:16 EST 1993


In <1993Jul8.185447.9541 at serval.net.wsu.edu> qyi at NOSY.chem.wsu.edu (Qian Yi) writes:

>I am searching for the coordinates of crystal structure of cytochrome c
>peroxidase and cytochrome c complexes. If someone knows the PDB file names
>for those coordinates in Protein Data Bank, or someone has those files,   
>would you please let me know, or send me a copy of the files if convenient.
>Thanks. 

You can use gopher to search for coordinates I use the gopher at NIH.
You will get about three pages of hits on cytochrome c peroxidase

  Search Protein Data Bank Headers (NIH): cytochrome c peroxidase

 -->  1.  1CCP  YEAST CYTOCHROME |C PEROXIDASE (E.C.1.11  J.WANG,J.M.MAURO,S../      2.  2CCP  YEAST CYTOCHROME |C PEROXIDASE (E.C.1.11  J.WANG,J.M.MAURO,S../      3.  2CYP  CYTOCHROME |C PEROXIDASE (E.C.1.11.1.5)   B.C.FINZEL,T.L.POU../      4.  3CCP  YEAST CYTOCHROME |C PEROXIDASE (E.C.1.11  J.WANG,J.M.MAURO,S../      5.  4CCP  YEAST CYTOCHROME |C PEROXIDASE (E.C.1.11  J.WANG,J.M.MAURO,S../      6.  1BBH  CYTOCHROME |C'                            Z.REN,D.E.MC*REE  ../      7.  1C2R  CYTOCHROME |C=2=     



                     M.M.BENNING,G.WESE../      8.  1C53  CYTOCHROME |C-553                         A.NAKAGAWA,Y.HIGUC../      9.  1CC5  CYTOCHROME C=5= (OXIDIZED)                C.D.STOUT,D.C.CART../      10. 1CCR  CYTOCHROME |C                             H.OCHI,Y.HATA,N.TA../      11. 1CP4  CYTOCHROME P450=CAM= (CAMPHOR MONOOXYGEN  R.RAAG,T.L.POULOS ../      12. 1CY3  CYTOCHROME |C=3=                          R.HASER,M.FREY,F.P../      13. 1FCB  FLAVOCYTOCHROME |B=2= (E.C.1.1.2.3)       F.S.MATHEWS,Z.-*



X.../      14. 1GP1  GLUTATHIONE PEROXIDASE (E.C.1.11.1.9)     O.EPP,R.LADENSTEIN../      15. 1NPX  NADH PEROXIDASE (E.C.1.11.1.1) NON-NATIV  T.STEHLE,S.A.AHMED../      16. 1PHA  CYTOCHROME P450CAM FROM PSEUDOMONAS PUTI  T.L.  27-JUL-92/
      17. 1PHB  CYTOCHROME P450CAM FROM PSEUDOMONAS PUTI  T.L.  27-JUL-92/
      18. 1PHC  CYTOCHROME P450CAM FROM PSEUDOMONAS PUTI  T.L.  27-JUL-92/

I suggest you fire up gopher and go get the coordinates you want

RGDS -=ROB=-






--
 Rob Harper                        E-mail:          harper at convex.csc.fi    
 Center for Scientific Computing   Molbio/software: harper at nic.funet.fi
 Tietotie 6, P.O. Box 405          Telephone:       +358 0 457 2076
 SF-02101 Espoo Finland            Fax:             +358 0 457 2302



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