Need: Determination of PDB Secondary Structure
turcotte at IRO.UMontreal.CA
Sun Jul 23 12:37:49 EST 1995
[ On 21 Jul 1995 16:39:26 +0400 ]
[ andyg at vnigen.msk.su (Igor Grigoriev) wrote: ]
| Dear Colleagues,
| During an analysis of Brookhaven Protein Databank I met that
| some description of secondary structure for several proteins
| was undetermined or half-determined.
| Could you please help me to find a program for determination
| of protein secondary structure on basis of 3D coordinates
| obtained from Brookhaven PDB. The program should run under DOS
| on PC.
It has already been done for you, have a look at DSSP:
The DSSP program was designed by Wolfgang Kabsch and Chris Sander to
standardize secondary structure assignment. The DSSP database is a
database of secondary structure assignments (and much more) for all of
the entries in the Protein Data Bank (PDB).
Hope this helps!
Marcel TURCOTTE Université de Montréal
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