Backbone bond angle data
Maria Ortner
maria at Zenzi.came.sbg.ac.at
Fri May 16 02:08:35 EST 1997
cweiss1 at umbc.edu (Christopher Weiss) writes:
> I need protein backbone bond angle and bond length data. Not
> tortional angles.
> Angles and lengths needed:
> N-terminus H-N-H
> N-terminus H-N-C
> N-Calpha-H
> N-Calpha-C(carboxyl)
> O=C-Calpha
> O=C-N
> H-N-H (in peptide bond)
> C-N-Calpha
> C-terminus Calpha-C=O
> C-terminus Calpha-C-O
> C-terminus O=C-O
>
> Did I miss any?
>
> Thanks,
> Christopher
>
Try this paper:
Engh, R. R. & Huber, R. (1991). Accurate bond and angle
parameters for x-ray protein structure refinement. Acta
Crystallographica Section A, 47, 392-400.
I extracted some data from this paper for my own use, but more
can be found in this paper. Here is a table of some
bond angles I extracted:
Atoms Name of the atoms in Engh&Huber Value
----------------------------------------------------
N-Ca-C C-CH1E-NH1 111.2
Ca-C-O CH1E-C-O 120.8
N-Ca-Cb CH3E-CH1E-NH1 110.4
C-Ca-Cb C-CH1E-CH3E 110.5
Ca-C-N CH1E-C-NH1 116.2
O-C-N NH1-C-O 123.0
C-N-Ca C-NH1-CH1E 121.7
N-Ca-C C-CH1E-NH1 111.2
Hope that helps,
Maria
--
--------------------------------------------------
Maria Ortner
Center of Applied Molecular Engineering
University of Salzburg, Austria
Maria.Ortner at came.sbg.ac.at
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