similarities/identities from an alignment?

[Simon Andrews]

Petri Kursula wrote:
> 
> Hi,
> 
> I would like to get a table of identities/similarities between each
> sequence in a multiple sequence alignment. Any pointers to servers or
> programs automatically doing this would be appreciated.
> 
> Pete

You can do this using the program GeneDoc, which is freeware.  This
produces shaded graphics from multiple sequence alignments, and will
also tabulate percentage identity / similarity.

You can download it from;

http://www.cris.com/~Ketchup/genedoc.shtml

HTH

Simon.