Describing secondary structure

[Toby Skinner]

Hi, I'm trying to define a grammar for describing the secondary structure of
a protein, so far I've trawled the net and all the various prediction sites
but I cant find any that require the user to specify the seconday structure.
I need a simple language which can encompass all the essential information
about a proteins secondary structure.

If you have any ideas on this or would like to contribute then please reply
to this, I'll be sure to check back soon.

Toby