set up non-homologous database

Chun Ting Zhang ctzhang at
Sun Mar 26 08:52:37 EST 2000

Hi, Dear Sir/Madame,

I would like to establish my own non-homologous database of proteins using FASTA, in which the pairwise sequence identity is less than a threshold, say, 30%. Those who can provide me a complete program to reach this goal will be highly appreciated.
One more question: When the lengths of the two sequences to be aligned are different, how to define the sequence identity?

Ren Zhang
Email: ctzhang at 
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