ALL E. coli proteins with MW~25.2 kDa

Emir Khatipov ekhatipo at NOSPAMmidway.uchicago.edu
Wed Apr 25 16:57:31 EST 2001


Raphael,
Could you explain how did you get this list from the SwissProt database? I
believe it would be interesting to everybody.
Thanks.
Emir

<nospam at our.site> wrote in message news:9c78b7$e19$1 at icrf.news...
> This message has been posted by:  Raphael Chaleil
<r.chaleil at REMOVE-THIS-TO-SENDicrf.icnet.uk>
>
> Cyril Privezentzev wrote:
> >
> > Dear Colleagues:
> > I need to find a list of ALL E. coli proteins with MW~25.2 kDa. What
tool
> > could be useful for it?
> > Thanx,
> >
> > Dr. Cyril V. Privezentzev
> > CNRS UMR 8532
> > Institute Gustave Roussy
> > 39, rue Camille Desmoulins
> > 94805 Villejuif Cedex
> > FRANCE
> >
> > Tel.  33 1 42115404
> > Fax  33 1 42115276
> >
> > ---
> Here is the list of all E. coli proteins between 25 and 25.4 kDa in
> SwissProt; PAC is the SwissProt primary accession number; the sequences
> are available from http://ca.expasy.org/sprot
>
> mysql> select PAC,entry_name,MW from swiss where entry_name like
> "%_ECOLI" and MW>=25000 and MW<=25400;
> +--------+------------+-------+
> | PAC    | entry_name | MW    |
> +--------+------------+-------+
> | P30843 | BASR_ECOLI | 25045 |
> | P31676 | ENVR_ECOLI | 25198 |
> | P76281 | EXOX_ECOLI | 25133 |
> | P25402 | FANE_ECOLI | 25314 |
> | P24185 | FDNI_ECOLI | 25368 |
> | P31068 | FLIH_ECOLI | 25050 |
> | P46008 | FOCC_ECOLI | 25199 |
> | P27294 | INAA_ECOLI | 25296 |
> | P21866 | KDPE_ECOLI | 25362 |
> | P37005 | LAST_ECOLI | 25259 |
> | P06722 | MUTH_ECOLI | 25396 |
> | P33598 | NUOB_ECOLI | 25056 |
> | P55798 | PRP1_ECOLI | 25274 |
> | P55799 | PRP2_ECOLI | 25098 |
> | P25531 | RADC_ECOLI | 25343 |
> | P03842 | RNPH_ECOLI | 25352 |
> | P39306 | SGAE_ECOLI | 25278 |
> | Q00738 | TRJ9_ECOLI | 25028 |
> | P19396 | TRMH_ECOLI | 25343 |
> | P36857 | YADF_ECOLI | 25097 |
> | P77279 | YBBL_ECOLI | 25382 |
> | P41037 | YBIH_ECOLI | 25016 |
> | P75856 | YCBR_ECOLI | 25388 |
> | P76256 | YEAZ_ECOLI | 25181 |
> | P06979 | YECA_ECOLI | 25039 |
> | P33023 | YEIL_ECOLI | 25294 |
> | P76543 | YFFL_ECOLI | 25143 |
> | P55139 | YGCF_ECOLI | 25029 |
> | Q46898 | YGCI_ECOLI | 25209 |
> | P03813 | YGEA_ECOLI | 25248 |
> | Q46844 | YGHT_ECOLI | 25355 |
> | P28722 | YHCA_ECOLI | 25339 |
> | P37619 | YHHQ_ECOLI | 25269 |
> | P32713 | YJCO_ECOLI | 25079 |
> | P39292 | YJFJ_ECOLI | 25333 |
> | P39293 | YJFK_ECOLI | 25009 |
> | P33999 | YJJG_ECOLI | 25300 |
> | P77380 | YLCA_ECOLI | 25394 |
> | P75967 | YMFD_ECOLI | 25147 |
> | P76114 | YNCC_ECOLI | 25151 |
> | P45801 | YRFG_ECOLI | 25399 |
> +--------+------------+-------+
> 41 rows in set (5.25 sec)
>
> --
> Raphael Chaleil
> Biomolecular Modelling Laboratory
> Imperial Cancer Research Fund
> 44 Lincoln's Inn Fields
> London WC2A 3PX, England
> Tel +44-(0)20-7269-3583
> URL lab : http://www.bmm.icnet.uk
> URL perso : http://perso.infonie.fr/sphinx05





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