[Protein-analysis] Re: What do you use for MSA and Design?

Chris cupton at uvic.ca
Mon Jul 17 12:10:19 EST 2006


For display and editing of MSAs we produced Base-By-Base.
http://athena.bioc.uvic.ca/workbench.php?tool=basebybase&db=

Chris

In article <mailman.163.1152394680.20007.proteins at net.bio.net>, Richard
Colman <colman at uci.edu> wrote:

> I am currently working on a computer user interface for specifying (not
> designing) mutational protein libraries. In addition to a "online forms
> interface" I would like to be able to directly import protein sequence data
> and multiple sequence alignments from a file.
> 
> I was wondering whether any researchers would like to comment on what types
> of programs and data formats are popular. In paticular, I am considering an
> function to directly import Excel spreadsheet files (ala GoCore, etc.).
> 
> Any comments would be greatly appreciated.
> 
> Rick Colman
> UC Irvine
>


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