[Protein-analysis] Re: Domain binding motifs database?

Oznur Tastan via proteins%40net.bio.net (by otastan from gmail.com)
Tue Oct 16 14:22:21 EST 2007


Thanks! I'll have a look at those.
cheers,
oznur
On 10/16/07, Philipp Pagel <pDOTpagel from gsf.de> wrote:
>
> Philipp Pagel <pDOTpagel from gsf.de> wrote:
> > Oznur Tastan <otastan from gmail.com> wrote:
> > > Is anyone aware of any database or list that includes the known domain
> > > binding motifs. By domain binding motifs, I mean  the protein sequence
> > > motifs on the binding site  to a protein domain. Like the PXXXP motif
> > > observed in SH3 binding domains.
>
> Oh - and I forgot to mention DOMINO - a nice database of domain motif
> interactions from the Cesareni group:
>
> http://mint.bio.uniroma2.it/domino/
>
> cu
>         Philipp
>
> --
> Dr. Philipp Pagel                             Tel. +49-8161-71 2131
> Lehrstuhl f. Genomorientierte Bioinformatik   Fax. +49-8161-71 2186
> Technische Universität München
> http://mips.gsf.de/staff/pagel
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-- 
oznur


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