Dchutchisn dchutchisn at
Thu Apr 11 20:09:58 EST 1996

How does autoted check for quality?

I am currently using autoted as part of a shell script to clip ABI
generated sequences prior to being assembled, but frequently it "fails"
reads that look OK when examined with ted. Is autoted using something
besides clip-seqs to edit the trace files?

Looking at the failed trace files, there are not enough n's to warrent
failure by a sliding window of 5 bases finding 2 or more n's - which is my
(possibly inacurate) understanding of how clip-seqs works.

Are there parameters that can be set in autoted that might allow these
sequences to "pass"?

Any help is appreciated!

Don Hutchison

More information about the Staden mailing list