We are currently using Staden to build seq. contigs and are able to
identify Alu sequences and have them highlighted in our contig. I would
like to also highlight MERS and other repetitive seqs. I have downloaded
repbase and can extract the seqs., but where should they go? In the Alu
folder in the tables directory? Will i be able to idetify the type of
repeat in the contig. Any pointers appreciated.