gap4: entering template information

Frank-Joerg Vorhoelter Frank.Vorhoelter at Genetik.Uni-Bielefeld.DE
Mon Jan 25 06:41:53 EST 1999


Hallo,

my name is Frank Vorhoelter. I'm a Ph.D. student, trying to sequence a
cosmid of Xanthomonas campestris DNA. By now, I have a couple of
sequence reads, which I try to assemble via pregap ang gap4. Some of
these reads are derived from common PCR templates. In the gap4 manual, I
saw  hints suggesting gap4 might be able to use such information to
highlight  relationships between templates and reads. However, I do not
know how to tell gap4 which read origins from which template. When I
enter reads through pregap, for every read a new template is created.

For any kind of help I'd be very thankful, as I am not a computing
expert.
Kind regards, and thanks in advance

Frank
--
Frank-Joerg Vorhoelter
Biologie VI (Genetik)        Tel.   ++49-(0)521-1062036
Universitaet Bielefeld       Fax    ++49-(0)521-1065626
Universitaetsstr. 25
D-33615 Bielefeld            e-mail frank at genetik.uni-bielefeld.de
Germany



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