extract_readings quality function not working....

major major at genome.wi.mit.edu
Tue Aug 14 16:13:18 EST 2001


Worked like a charm! 
Thanks again James.

-John Major

jkb at mrc-lmb.cam.ac.uk wrote:
> 
> In <3B72C557.7AB05810 at genome.wi.mit.edu> major at genome.wi.mit.edu (major) writes:
> 
> > Here is the piece of code(which works spledidly with Staden.02_97.beta,
> > except for the filename char limit...)
> >
> [...]
> 
> > if {$specdir} {
> >     extract_readings -io $io -readings $all_reads -quality 1 -directory $dirname
> 
> Try using -format 2 instead. Formats 0, 1 and 2 correspond to the GUI; normal,
> preassembled, directed assembly.
> 
> Sorry about the programming documentation being out of date. I'd expect there
> to be heaps of other changes since it was written (1997) too. Unfortunately
> it's hard to find the time, but we really ought to update this stuff. It's
> just such a _tedious_ effort. Maybe I should investigate some auto-generation
> mechanism to extract comments from the source.
> 
> James
> --
> James Bonfield (jkb at mrc-lmb.cam.ac.uk)   Tel: 01223 402499   Fax: 01223 213556
> Medical Research Council - Laboratory of Molecular Biology,
> Hills Road, Cambridge, CB2 2QH, England.
> Also see Staden Package WWW site at http://www.mrc-lmb.cam.ac.uk/pubseq/




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