utilizing sequence quality scores results from new ABI basecaller

Cook, Malcolm MEC at Stowers-Institute.org
Fri Apr 25 03:07:15 EST 2003


Is is possible to configure staden pregap4 somehow to utilize the quality scores now available from ABI's new KB basecaller that are embedded in the ab1 files?

The net effect I suppose would be to transfer them as AV values into the .exp files without having to call phred.

Thanks!

Malcolm Cook
Database Applications Manager
Stowers Institute for Medical Research
1000 E 50th Street
Kansas City, MO 64110
tel: 816-926-4449
fax: (816) 926-2098
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