[Staden] gap4 does not run

Paul Donohue staden at topquark.net
Wed Apr 26 10:22:55 EST 2006


http://www.bio.net/bionet/mm/staden/2006-January/001358.html

On Wed, Apr 26, 2006 at 12:10:29AM +0000, Damien wrote:
> 
> I downloaded the Staden package and tried to use it. Unfortunately, the
> program gap4 refuses to start (while othe programs like trev of pregap4
> run fine).
> 
> When I try to start gap4, I get the following message:
> 
> invalid command name "load_alignment_matrix"
>     while executing
> "load_alignment_matrix       [keylget gap_defs ALIGNMENT.MATRIX_FILE]"
>     (file "/home/damien/BIN/staden-linux-1-6-0/lib/gap/gap.tcl" line 683)
> 
> I would appreciate if someone could tell me what to do. My OS is Kubuntu
> Linux (Debian based).
> 
> Damien
> 
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