(none)

[Hector Viadiu]

I've been having troubles generating a psf file for a DNA molecule with
a phosphate in the 5' end. I modified the generate.inp file to include the
5PHO segment of Berman's topology file (top_ndbx96.dna)

chain
       LINK NUC HEAD - * TAIL + * END
       FIRST 5PHO TAIL + * END { 5-terminus without phosphate }
       LAST 3TER HEAD - * END { 3-terminus }
       coordinates @/quake/viadiu/mnsoak/c10/dna3 end
   end

but I still get an error:

%BINBON-ERR: no bond parameters for atom types HO   OH

that I haven't solved modifying the parameter file (param_ndbx_high.dna).

Thanks a lot for your help.

Hector Viadiu.