Hot Sites for Heteros in Sweden $$$$$ (just kidding !)
Gerard 'CD' Kleywegt
GERARD at XRAY.BMC.UU.SE
Tue Jul 15 12:33:14 EST 1997
Don't delete and unsubscribe yet !
The option in XPLO2D to generate X-PLOR dictionaries for hetero
entities has been improved. Check the manual at:
http://alpha2.bmc.uu.se/~gerard/manuals/xplo2d_man.html
Improved X-PLOR dictionaries for more than 1,000 hetero compounds
have been generated and are available from:
http://alpha2.bmc.uu.se/xhet/
(They will be mirrored at Yale soon (Paul ?).)
The XDICT server, to generate X-PLOR dictionaries for your own
hetero compounds has also been improved; see:
http://alpha2.bmc.uu.se/~gerard/servers/xdict.html
A new WWW service is available which will do some simple checks
on the geometry of hetero compounds. Go to:
http://alpha2.bmc.uu.se/~gerard/servers/hetze.html
More information related to hetero compounds can be found at:
http://alpha2.bmc.uu.se/~gerard/manuals/hetero.html
For the crystallographers: an example X-PLOR input file to
set up systematic SA omit calculations for your whole molecule
(e.g., leaving out 10 residues at a time) can be found at
ftp://alpha2.bmc.uu.se/pub/gerard/omac/rs_rfree_zone.inp
There is also an accompanying C-shell script which generates:
(1) a MAPMAN input file to mappage all the systematic omit files, and
(2) an O macro to go through the results (and to calculate "real-space
Rfree" values, i.e. real-space fit values inside each residue's
own omit density)
This script is at:
ftp://alpha2.bmc.uu.se/pub/gerard/omac/dsn6.csh
Enjoy !
--cd
More information about the X-plor
mailing list