restart files
Jack Tanner
TANNER at BRAGG2.BCHS.UH.EDU
Tue May 27 11:24:13 EST 1997
I have a question about restart files in xplor.
Should a trajectory that is pieced together using restart files be
identical to the trajectory obtained from a single continuous calculation?
I would think the answer is yes, but the following test case suggests
otherwise.
This is the energy at step 152000 in a trajectory started from a
restart file written at step 100000:
--------------- step=152000 at 76.00000 ps --------------------------------
| E(kin)+E(total)=-12155.544 E(kin)=7851.728 temperature=300.286 |
| Etotal =-20007.272 grad(E)=21.586 E(BOND)=2871.459 E(ANGL)=3679.353 |
| E(DIHE)=1969.108 E(IMPR)=1180.962 E(VDW )=-5259.302 E(ELEC)=-22863.850 |
| E(PVDW)=-215.554 E(PELE)=-1369.447 |
-------------------------------------------------------------------------------
And here is the energy at step 152000 in a trajectory started from a
restart file written at step 150000:
--------------- step=152000 at 76.00000 ps --------------------------------
| E(kin)+E(total)=-12157.636 E(kin)=7863.307 temperature=300.729 |
| Etotal =-20020.943 grad(E)=21.600 E(BOND)=2866.401 E(ANGL)=3685.841 |
| E(DIHE)=1969.488 E(IMPR)=1183.287 E(VDW )=-5265.852 E(ELEC)=-22872.107 |
| E(PVDW)=-212.158 E(PELE)=-1375.843 |
-------------------------------------------------------------------------------
Note that the energies at step 152000 for the two calculations are
similar but not identical. I used v3.851 on an alpha.
The core of the dynamcs verlet script (omitting i/o statements) was
dynamics verlet
ascii=true vascii=true
tcoupling=true tbath=300
timestep=0.0005 nstep=50000
iasvel=current firsttemp=300
iprfrq=2000 nprint=2000
end
Thanks,
Jack Tanner
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