disulfide bonds too long
Triss Elkins
trissa at phu148.um.us.sbphrd.com
Tue Feb 29 12:01:01 EST 2000
I have done a molecular replacement with a model in which there are
several disulfide
bonds that are too long - from 2.2 to 2.5A. I am refining with CNS and
have defined
these as disulfides in generate.inp. In modeling, by selecting a
favored rotamer conformation for
each cysteine, I end up with disulfide bonds that are about 2.0A but in
refinement the
bond length always increases. If I increase wa substantially, the bond
lengths do stay
closer to 2.0 but geometry overall is too loose. Anyone have an idea
how to deal with this?
Trissa Elkins
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