CNS: composite_omit.inp
diane h peapus
dp72 at postoffice2.mail.cornell.edu
Wed Mar 15 22:08:47 EST 2000
Hi everyone.
I'm trying to run a composite_omit map in P4(3)2(1)2 using
cns version 1.0. It runs for 2 days, computing the whole
until cell map. A previous composite_omit map in C2 using
cns version 0.5 seemed to propertly define and refine a
single asu, taking about 6hrs.
I've looked carefully in the .inp files of each and can't
see any user-input where one would specify the extend of
the required refinement... and I'd think there would be
reasonable defaults that are space group specific. For
2Fo-Fc maps, model_map.inp allows you to choose 'molecule'
'asu' or 'unit cell' for the extent of the map when the
defaults end up inconvenient, but there doesn't seem to
be such a thing for composite_omit maps.
Comparing composite_omit.inp in v1.0 (which refines the
whole P4(3)2(1)2 cell) to v0.5 (which finds the C2 asu
just fine) there is a difference in the part of the
composite_omit input file that you aren't supposed to have
to edit.
v1.0 composit_omit.inp template has stuff that looks like this....
> { wrap the molecule into the primary unit cell }
> do (x=mod(x+10,1)) ( &atom_select )
> do (y=mod(y+10,1)) ( &atom_select )
> do (z=mod(z+10,1)) ( &atom_select )
>
> show max ( x ) ( &atom_map )
> eval ($xmax=$result+($cushion/&a))
> show min ( x ) ( &atom_map )
> eval ($xmin=$result-($cushion/&a))
(etc)
v 0.5 composit_omit.inp template has suff that looks like this...
< { wrap the molecule into the primary unit cell }
< do (x=mod(x+10,1)) ( all )
< do (y=mod(y+10,1)) ( all )
< do (z=mod(z+10,1)) ( all )
<
< show max ( x ) ( &atom_select )
< eval ($xmax=$result)
< show min ( x ) ( &atom_select )
< eval ($xmin=$result)
(etc)
Somehow, something with max(x), max(y), max(z) isn't being
determined correctly.
can anyone help me out?
thanks
diane h peapus
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diane h peapus, phd dp72 at cornell.edu
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