CONECT records in pdb files?

[Simon M. Brocklehurst]

Dr Sue Brown wrote:
> 
> I have a PDB file of a protein structure, and I need to generate a
> complete set of CONECT records from the coordinates, including the
> backbone connectivities.
> Are there any program utilities available to do this?
> If not, any other suggestions?
> 
> Any help appreciated,
> 
> Sue
> 
> Dr Sue Brown
> email: sebrown at laue.biochem.ubc.ca
> Dept of Biochemistry, University of British Columbia
> Vancouver, Canada, V6T 1Z3

You can do this easily with NAOMI by using input commands:


	        read pdb my_pdb_file.pdb
                use covalent_bonds
                table conect_records

More info at the Web site:

   http://www.ocms.ox.ac.uk/~smb/Software/N_details/naomi.html

_____________________________________________________________________________
|
|  ,_ o     Simon M. Brocklehurst,
| /  //\,   Oxford Centre for Molecular Sciences, Department of Biochemistry,
|   \>> |   University of Oxford, Oxford, UK.
|    \\,    E-mail: smb at bioch.ox.ac.uk | WWW: http://www.ocms.ox.ac.uk/~smb/ 
|____________________________________________________________________________