Indexing
Qilu Ye
ye at crystal.biochem.queensu.ca
Mon Jul 6 07:51:35 EST 1998
Hi, everyone:
I have a problem for indexing my new crystal. (1) I did autoindex and
got autoindex list as follow:
Lattice Metric tensor Best cell (symmetrized)
distortion index Best cell (without symmetry
restrains)
primitive cubic 39.19% 82.19 81.94 117.94 89.44 90.28
58.85
95.53 95.53
95.53 90.00 90.00 90.00
I centred cubic 30.28% 140.71 142.95 117.94 34.97
89.35 88.74
134.34 134.34
134.34 90.00 90.00 90.00
F centred cubic 36.43% 181.98 144.08 143.42 69.74 120.93
122.10
157.53 157.53
157.53 90.00 90.00 90.00
primitive rhombohedral 15.26% 144.08 142.95 141.87 33.54 58.95
32.63
142.97 142.97
142.97 43.07 43.07 43.07
114.68 114.68
388.48 90.00 90.00 120.00
primitive hexagonal 0.59% 81.94 82.19 117.94 90.28 90.56
121.15
82.06 82.06
117.94 90.00 90.00 120.00
primitive tetragonal 11.95% 80.64 81.94 117.94 89.44 90.85
119.27
81.29 81.29
117.94 90.00 90.00 90.00
I centred tetragonal 7.48% 82.19 81.94 248.14 98.61 81.04
58.85
82.06 82.06
248.14 90.00 90.00 90.00
primitive orthorhombic 11.93% 80.64 81.94 117.94 89.44 90.85
119.27
80.64 81.94
117.94 90.00 90.00 90.00
C centred orthorhombic 0.38% 80.64 142.95 117.94 89.84 90.85
89.80
80.64 142.95
117.94 90.00 90.00 90.00
I centred orthorhombic 7.48% 81.94 82.19 248.14 81.04 81.39
121.15
81.94 82.19
248.14 90.00 90.00 90.00
F centred orthorhombic 7.03% 80.64 142.95 248.14 89.78 71.89
89.80
80.64 142.95
248.14 90.00 90.00 90.00
primitive monoclinic 0.57% 80.64 117.94 82.19 90.28 119.58
89.15
80.64 117.94
82.19 90.00 119.58 90.00
C centred monoclinic 0.15% 80.64 142.95 117.94 89.84 90.85
89.80
80.64 142.95
117.94 90.00 90.85 90.00
primitive triclinic 0.00% 80.64 81.94 117.94 89.44
89.15 60.73
autoindex unit cell 80.97 80.97 117.93 90.00 90.00 120.00
crystal rotx, roty, rotz -29.145 116.663 -29.798
Autoindex Xbeam, Ybeam 150.83 149.49 Volume of the
primitive cell 679649.
(2) I tried Denzo for all autoindexing symmetry less then 1%. Almost
all of these R factor are
more than 20%, except using primitive triclinic R factor is 3.5%.
(3)The crystal morphology looks hexagonal shape and size is 0.5x0.5x0.4
mm.
(4)The protein molecular weight is 35 KD.
If someone has some ideas and some suggestions I could try, it would be
very appreciated.
Thanks a lot.
Qilu Ye
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