Setor-colouring secondary structure
Flip Hoedemaeker
flip at chemg20.leidenuniv.nl
Tue Nov 10 04:41:11 EST 1998
Hi Steffen,
I've had your specific problem, and I don't think there's a simple
solution. What I've done is load the molecule a number of times (You can
load up to 8 chains) and then use residue editor to select different parts
in different chains. You can then color them independently. I don't know
any better way, maybe you should ask Steve Evans, the author.
(email: "Stephen V. Evans" <evans at flint.biochm.uottawa.ca> )
Hope this helps,
Flip
On 8 Nov 1998, Steffen Graether wrote:
> Hello,
>
> I would like to use Setor to generate a figure, but I'm having problems
> with colouring. I would like the protein to be coloured by secondary
> structure (eg. coils as white and helices as green), but on top of that
> I want to be able to select certain stretches of backbone and colour it
> differently (say residues 10-20 as red). However, I seem to be able to
> choose only between colour the spline by secondary structure OR by
> residue number. Short of having to select each stretch of secondary
> structure 'by hand', is there any way to do both?
>
> Steffen
>
> --
> *************************************************************************
> * * *
> * Steffen Graether * steffen at canopus.biochem.ualberta.ca *
> * * *
> *************************************************************************
>
>
>
---------------------------------------------------------
P.J. Hoedemaeker Ph.D.
Biofysische Struktuurchemie, Gorlaeus Laboratoria L010
Einsteinweg 55, 2333 CC Leiden, the Netherlands
Tel: +31-71-527-4211/4414 Fax: +31-71-5274349
http://chemg20.leidenuniv.nl/~flip/home.html
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