IUBio

Twinning and Space group P31

Hartmut "Hudel" Luecke hudel at uci.edu
Tue Feb 2 14:35:49 EST 1999


Hi John!

I have recently encountered strong merohedral twinning in spacegroup
P6(3)
which made the data look like P6(3)22.  Nevertheless, the structure could
be
refined to 1.55 A with excellent maps and stereo chemistry.

You may want to take a look at

http://anx12.bio.uci.edu/~hudel/br/twinning/index.html

Todd's server does a great job of identifying the twinning.  I think
your cross-rotation function during MR should have resulted in
multiple non-redundant solutions as well.  You can also try self-rotation

functions which should show 2-folds in the plane of twinning.

I have found that Todd's server comes up with estimates of the twinning
fraction that are slightly lower when compared to the refined twinning
fraction
from SHELXL.

I would recommend using SHELXL to refine against the twinned raw data
(intensities) rather than data-based and twin-ratio-based detwinning of
your raw data.

Good luck, Hudel


John R. Horton wrote:

> Quickly...
>
> I have been trying to refine a protein structure derived from a
> molecular replacement solution for some time...while the R factor went
> down easily, the Rfree would stay the same or go up whatever I did...
> Recently, I surmised and discovered that I have merohedrally twinned
> data...I used the new crystal twinning server at UCLA at
>
> http://www.doe-mbi.ucla.edu/Services/Twinning/
>
> Anyway, I am hoping someone can give me some insight:
>
> The space group is P31 and the server gives me the following results:
>
> -------------
> Partial Merohedral Twinning Test Results
> No. Total Data Read = 17264
> No. Acentric Data = 17264
> No. Data Within Resolution Range = 9390
>
> Testing all possible twin laws for the given space group
>
> 2 along a, b
>
> No. Twin Law Related Reflections = 4270 (pairs)
> No. Twin Law Pairs Considered = 2135
>
> <H> = 0.372939
> <H2> = 0.198790
>
> Twin Fraction = 0.120468 +/- 0.006593
>
> 2 along a*, b*
>
> No. Twin Law Related Reflections = 4375 (pairs)
> No. Twin Law Pairs Considered = 2187
>
> <H> = 0.363768
> <H2> = 0.193497
>
> Twin Fraction = 0.127641 +/- 0.008591
>
> 2 along c
>
> No. Twin Law Related Reflections = 4350 (pairs)
> No. Twin Law Pairs Considered = 2175
>
> <H> = 0.044386
> <H2> = 0.003633
>
> Twin Fraction = 0.451707 +/- 0.003908
>
> ------------
>
> Can the data be used and successfully detwinned??
>
> --
>
> ------------------------------------------------------------------
> John R. Horton Ph.D             E-mail:         jrhorto at emory.edu
> Assistant Professor (Research)  Voice Mail:     404-727-8492
> Emory School of Medicine        FAX:            404-727-3746
> Department of Biochemistry
> 1510 Clifton Road, Suite G239
> Atlanta, GA  30322
> ------------------------------------------------------------------


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