Dear all:
I'm refining a protein structure complexed with an inhibitor. I found
that if I refine the structure in the range from 20 to 2.37 angstrom, I can
see a strong positive density in fo-fc map in the second binding
site,However,if I choose to refine it in 10-2.37 range, this peak is nearly
invisible.
What's going on here?Which one should I trust, the more complete one?
Thanks