other "yeast" in Entrez ... was: Re: spt7 and cDNA libraries

francis at NCBI.NLM.NIH.GOV francis at NCBI.NLM.NIH.GOV
Thu Aug 10 22:40:08 EST 1995


> From: SLForsburg <susan_forsburg at qm.salk.edu>

Susan says:

> sigh. 
> 
> Once again some impressive "yeast" resources not applicable to pombe.  
> Or Candida.  Or Kluveromyces.  Or Pichia.  Or Yarrowia.  Or....

Well, the Entrez example I presented is for all those yeast you
mention, and a few other species (lots of those slower Eukaryotes 
for example ;).  

But I know YPD and SGD are very good, and very special for
Saccharomyces cerevisiae   ...  in Entrez, you can browse the Taxonomy,
and look at the protein or nucleotide records that correspond to that
lineage (or part there of!).  The WWW Entrez (URL below) you can even
output part of the tree, and makes all the nodes on it hypertext links
to the records they correspond to, allowing you to also see the
corresponding bibliography.

As an example, I attach the output from  Saccharomycetales node and
lower.  If it's in our tree, this means that we have some DNA or
protein sequence for it (with a few exceptions).  This tree is
therefore not to represent our complete knowledge of that  lineage, 
but is a good tool to see what is there.


The URL for Entrez is:

http://www3.ncbi.nlm.nih.gov/Entrez/index.html

regards to all, and to Susan,


francis

--
| B.F. Francis Ouellette  
| GenBank
|
| francis at ncbi.nlm.nih.gov   


Saccharomycetales
-Cephaloascaceae
--Cephaloascus
---Cephaloascus fragrans
-Dipodascaceae
--Dipodascus
---Dipodascus albidus
---Dipodascus sp.
--Galactomyces
---Galactomyces geotrichum
-Endomycetaceae
--Ascoidea <fungus>
---Ascoidea africana
--Endomyces
---Endomyces fibuliger
--Pachysolen
---Pachysolen tannophilus
--Pichia
---Pichia acaciae
---Pichia americana
---Pichia angusta
---Pichia anomala
---Pichia bimundalis
---Pichia bispora
---Pichia canadensis
---Pichia capsulata
---Pichia ciferrii
---Pichia dryadoides
---Pichia fabianii
---Pichia farinosa
---Pichia glucozyma
---Pichia guilliermondii
---Pichia henricii
---Pichia holstii
---Pichia jadinii
---Pichia kluyveri
---Pichia membranaefaciens
---Pichia methanolica
---Pichia minuta
---Pichia muscicola
---Pichia norvegensis
---Pichia ohmeri
---Pichia pastoris
---Pichia petersonii
---Pichia philodendra
---Pichia pijperi
---Pichia pinus
---Pichia silvicola
---Pichia sp.
---Pichia stipitis
---Pichia subpelliculosa
---Pichia sydowiorum
---Pichia wickerhamii
--Zygoascus
---Zygoascus hellenicus
-Lipomycetaceae
--Dipodascopsis
---Dipodascopsis uninucleata
--Lipomyces
---Lipomyces kononenkoae
---Lipomyces starkeyi
-Metschnikowiaceae
--Ashbya
---Ashbya gossypii
--Eremothecium
---Eremothecium ashbyi
--Metschnikowia
---Metschnikowia australis
---Metschnikowia bicuspidata
---Metschnikowia hawaiiensis
---Metschnikowia krissii
---Metschnikowia lunata
---Metschnikowia pulcherrima
---Metschnikowia reukaufii
---Metschnikowia zobellii
--Nematospora
---Nematospora coryli
-Saccharomycetaceae
--Ambrosiozyma
---Ambrosiozyma platypodis
--Arxiozyma
---Arxiozyma telluris
--Citeromyces
---Citeromyces matritensis
--Clavispora
---Clavispora lusitaniae
---Clavispora opuntiae
--Debaryomyces
---Debaryomyces carsonii
---Debaryomyces castellii
---Debaryomyces coudertii
---Debaryomyces etchellsii
---Debaryomyces hansenii
---Debaryomyces marama
---Debaryomyces melissophilus
---Debaryomyces nepalensis
---Debaryomyces occidentalis
---Debaryomyces polymorphus
---Debaryomyces pseudopolymorphus
---Debaryomyces sp.
---Debaryomyces tamarii
---Debaryomyces udenii
---Debaryomyces vanriji
---Debaryomyces yamadae
--Dekkera
---Dekkera anomala
---Dekkera bruxellensis
---Dekkera custersiana
---Dekkera naardenensis
--Issatchenkia
---Issatchenkia orientalis
--Kluyveromyces
---Kluyveromyces aestuarii
---Kluyveromyces lactis
---Kluyveromyces marxianus
---Kluyveromyces polysporus
---Kluyveromyces thermotolerans
---Kluyveromyces waltii
--Lodderomyces
---Lodderomyces elongisporus
--mitosporic Saccharomycetaceae
---Brettanomyces
----Brettanomyces anomalus
----Brettanomyces bruxellensis
----Brettanomyces custersianus
----Brettanomyces custersii
----Brettanomyces naardenensis
---Candida
----Candida albicans
----Candida antarctica
----Candida apicola
----Candida azyma
----Candida boidinii
----Candida diversa
----Candida glabrata
----Candida lusitaniae
----Candida magnoliae
----Candida maltosa
----Candida melibiosica
----Candida nitratophila
----Candida parapsilosis
----Candida pseudotropicalis
----Candida rugopelliculosa
----Candida rugosa
----Candida sake
----Candida sp.
----Candida stellatoidea
----Candida tropicalis
----Candida utilis
----Candida viswanathii
----Candida wickerhamii
----Candida zeylanoides
---Eeniella
----Eeniella nana
---Trigonopsis
----Trigonopsis variabilis
--Pachytichospora
---Pachytichospora transvaalensis
--Saccharomyces
---Saccharomyces bayanus
---Saccharomyces castellii
---Saccharomyces cerevisia 
---Saccharomyces dairensis
---Saccharomyces exiguus
---Saccharomyces globosus
---Saccharomyces kluyveri
---Saccharomyces paradoxus
---Saccharomyces pastorianus
---Saccharomyces servazzii
---Saccharomyces sp.
---Saccharomyces unisporus
--Saturnospora
---Saturnospora dispora
--Schwanniomyces
---Schwanniomyces occidentalis
----Schwanniomyces occidentalis var. occidentalis
--Torulaspora
---Torulaspora delbrueckii
---Torulaspora pretoriensis
--Yamadazyma
---Yamadazyma ohmeri
--Yarrowia
---Yarrowia lipolytica
--Zygosaccharomyces
---Zygosaccharomyces bailii
---Zygosaccharomyces bisporus
---Zygosaccharomyces cidri
---Zygosaccharomyces fermentati
---Zygosaccharomyces rouxii
-Saccharomycodaceae
--Hanseniaspora
---Hanseniaspora uvarum
--Saccharomycodes
---Saccharomycodes ludwigii
-Saccharomycopsidaceae
--Saccharomycopsis
---Saccharomycopsis capsularis
---Saccharomycopsis fibuligera
--Williopsis
---Williopsis beijerinckii
---Williopsis californica
---Williopsis mucosa
---Williopsis pratensis
---Williopsis saturnus
----Williopsis saturnus var. mrakii
---Williopsis suaveolens
--Wingea
---Wingea robertsii
-unclassified Saccharomycetales
--Waltomyces
---Waltomyces lipofer




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