31/12/94 : Progress Report YEAST Genome Sequencing

Mordant Philippe pmordant at ben.vub.ac.be
Fri Jan 6 07:45:43 EST 1995


************************************************************************
*                                                                      *
*  PROGRESS REPORT FOR THE SYSTEMATIC SEQUENCING OF THE YEAST GENOME   *
*                                                                      *
************************************************************************

     **************************************************************
     *                                                            *
     *            GLOBAL STATUS ON DECEMBER 31, 94                *
     *                                                            *
     **************************************************************

------------------------------------------------------------------------
                               submitted estimated     new in    public 
                               up today   length       Dec 94   see list
                                  (kb)    (kb)   (%)    (kb)   (kb)  (%)
------------------------------------------------------------------------
				
CHR I            CAN  BUSSEY       223     223   100%     0    233  100%
CHR II           EU   FELDMANN     807     807   100%     0    807  100%
CHR III          EU   OLIVER       314     314   100%     0    314  100%
CHR IV RIGHT 1   USA  JOHNSTON       0     150     0%     0      0    0%
CHR IV RIGHT 2   USA  DAVIS          0     350     0%     0      0    0%
CHR IV LEFT 1    UK   BARRELL       39     540     7%     0     39  100%
CHR IV LEFT 2    EU   JACQ         230     600    38%    42     33   14%
CHR V            USA  DAVIS        569     569   100%   121    569  100%
CHR VI           JAP  MURAKAMI     270*    270   100%     0     20    7%
CHR VII          EU   TETTELIN     619    1150    54%    64     35    6%
CHR VIII         USA  JOHNSTON     563     563   100%     0    563  100%
CHR IX           UK   BARRELL      440     440   100%   112    440  100%
CHR X            EU   GALIBERT     724     735    99%    27    121   17%
CHR XI           EU   DUJON        666     666   100%     0    666  100%
CHR XII RIGHT    USA  JOHNSTON     186     750    25%    40    186  100%
CHR XII LEFT     EU   HOHEISEL      37     450     8%    37      0    0%
CHR XIII         UK   BARRELL      162     910    18%     0    162  100%
CHR XIV          EU   PHILIPPSEN   659     810    81%     0     76   12%
CHR XV           EU   DUJON        396    1150    34%    20     39   10%
CHR XVI RIGHT 1  UK   BARRELL        0     300     0%     0      0    0%
CHR XVI RIGHT 2  USA  JOHNSTON       0     150     0%     0      0    0%
CHR XVI LEFT 1   CAN  BUSSEY        10     300     3%     0     10  100%
CHR XVI LEFT 2   EU   GOFFEAU        0     300     0%     0      0    0%
				
------------------------------------------------------------------------
TOTAL YEAST GENOME                6915   12500  55,3%   464   4305   62%
------------------------------------------------------------------------


     K. Kleine                      P. Mordant and A. Goffeau
        MIPS          and         University of Louvain-La-Neuve
      Germany                              Belgium


     **************************************************************
     *                                                            *
     *                   DETAILLED INFORMATIONS                   *
     *                                                            *
     **************************************************************


Coordinator :   Up today        Public      Confidential  Estimated length
                (kb)    %     (kb)     %     (kb)     %      (kb)     %

EU  (Goffeau)   4451  64%    2091    47%     2360   53%      6982   56%
USA (Johnston)   749  11%     749   100%        0    0%      1613   13%
UK  (Barrel)     641   9%     641   100%        0    0%      2190   17%
USA (Davis)      569   8%     569   100%        0    0%       919    7%
JAP (Murakami)   270   4%      20     7%      250   93%       270    2%
CAN (Bussey)     234   3%     234   100%        0    0%       523    4%
-----------------------------------------------------------------------
TOTAL           6915 100%    4305            2610           12500  100%


LISTA 4 : About 2 Mb of additional single genes sequences are available in
          EMBL + GENBANK see e.g. LISTA 3 or 4 (linder at urz.unibas.ch) for
          more informations.


MIPS : Requests for searches (DNA/protein) against the confidential dataset
       of YEAST sequences stored at MIPS can be sent to the following email
       address : becker at mips.embnet.org
       GCG-formated sequences and a short description of the intentions are
       preferable.

       These data are steadily released (see YEAST issues).


SGB : The Saccharomyces Genome Database of Standford (SGB or SacchDB) is
      available at the WWW server. To access this information using one
      of the many WWW clients simply "Open URL" and enter the following
      information : http://genome-www.stanford.edu/


---------------------------------------------------------------------------


CHR I (Public sequences) :  BUSSEY  223 123 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1      -       L05027     8 700     24/11/92
2      -       L04459     2 001     06/05/93
3      -       L05146    29 410     23/08/93
    overlap with 1       -8 700     23/08/94
4      -       L20125     6 344     30/12/93
5      -       L28920    51 950     04/04/94
6      -       L22015    41 987     18/04/94
7      -       U12980   101 657     07/12/94
    overlaps            -10 226     21/12/94
                       ---------------------
                        223 123 bp  31/12/94


---------------------------------------------------------------------------


CHR II (Public sequences) :  FELDMANN  807 188 bp


The complete sequence can be retrieved by FTP to the following addresses :

ftp.ebi.ac.uk (193.62.196.6)                  (/pub/databases/yeast/chrII)
ftp.mips.embnet.org (141.61.66.2)                ([anonymous.yeast.chrII])
genome-ftp.stanford.edu (36.69.0.79)         (/pub/yeast/genome_seq/chrII)
ncbi.nlm.nih.gov (130.14.25.1)                   (/repository/yeast/chrII)


---------------------------------------------------------------------------



CHR III (Public sequences) :  OLIVER  315 338 bp


The complete sequence can be retrieved by FTP to the following addresses :

ftp.ebi.ac.uk (193.62.196.6)                 (/pub/databases/yeast/chrIII)
ftp.mips.embnet.org (141.61.66.2)               ([anonymous.yeast.chrIII])
genome-ftp.stanford.edu (36.69.0.79)        (/pub/yeast/genome_seq/chrIII)
ncbi.nlm.nih.gov (130.14.25.1)                  (/repository/yeast/chrIII)


---------------------------------------------------------------------------


CHR IV RIGHT 1 (Public sequences) :  JOHNSTON      0 bp



Nr   Cosmid   Accession   Size      Date
              Number      (bp)

-      -          -        -          -
                         --------------------
                               0 bp  31/12/94


---------------------------------------------------------------------------


CHR IV RIGHT 2 (Public sequences) :  DAVIS      0 bp



Nr   Cosmid   Accession   Size      Date
              Number      (bp)

-      -          -        -          -
                         --------------------
                               0 bp  31/12/94


---------------------------------------------------------------------------


CHR IV LEFT 1 (Public sequences) :  BARRELL  39 335 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1     9395      Z46727    39 335     20/11/92
                         --------------------
                          39 335 bp  31/12/94


---------------------------------------------------------------------------


CHR IV LEFT 2 (Public sequences) :  JACQ  32 821 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1    Foury     X82086     32 821     14/10/94
                         --------------------
                          32 821 bp  31/12/94


---------------------------------------------------------------------------


CHR V (Public sequences) :  DAVIS  569 202 bp


The complete sequence in Genbank format of chr V can be retrieved at the 
WWW server of the Moose. To access this information using one of the many 
WWW clients simply "Open URL" and enter the following information : 
http://alces.med.umn.edu/yt/yeast-chr.html


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1   YSCSYGP5   L11229     15 077     15/02/93
2   YSCSYGP4   L11120      9 704     12/04/93
3   YSCSYGP3   L11119      9 868     12/04/93
4   YSCSYGP1   L10718     15 978     19/04/93
5   YSCSYGP2   L10830     36 772     27/06/93
6   9871,...   U18530     62 643     19/12/94
7   9537,...   U18778     66 030     19/12/94
8   8199,...   U18779     36 872     19/12/94
9   9669,...   U18795     50 849     21/12/94
10  9379,...   U18796     43 100     21/12/94
11  6592,...   U18813     40 565     21/12/94
12  3612,...   U18814      8 443     21/12/94
13  9747,...   U18839     64 797     21/12/94
14  9781,...   U18916     68 303     21/12/94
15  8229,...   U18917     37 883     21/12/94
16  9163,...   U18922     64 044     21/12/94
      overlaps           -61 726     21/12/94
                         --------------------
                         569 202 bp  31/12/94


---------------------------------------------------------------------------


(*) CHR VI (Public sequences) :  MURAKAMI (and BARRELL) 19 882 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1    Barrell   Z46255     19 882     24/10/94
                         --------------------
                          19 882 bp  31/12/94

NB : 270 000 bp by MURAKAMI are still terminated, still confidential and
     will be public in May 95.

---------------------------------------------------------------------------


CHR VII (Public sequences) :  TETTELIN  35 214 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1    Foury     S58126     16 956     10/07/90
2    Foury     X83099     18 258     16/12/94
                         --------------------
                          35 214 bp  01/01/95


---------------------------------------------------------------------------



CHR VIII (Public sequences) :  JOHNSTON  562 638 bp


The complete sequence can be retrieved by FTP to the following addresses :

ftp.ebi.ac.uk (193.62.196.6)                (/pub/databases/yeast/chrVIII)
ftp.mips.embnet.org (141.61.66.2)              ([anonymous.yeast.chrVIII])
genome-ftp.stanford.edu (36.69.0.79)       (/pub/yeast/genome_seq/chrVIII)
ncbi.nlm.nih.gov (130.14.25.1)                 (/repository/yeast/chrVIII)

Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1   YSCH9196   U11583     55 070     05/07/94
2   YSCH9433   U11582     29 276     05/07/94
3   YSCHL5018  U11581     16 274     10/07/94
4   YSCH9780   U10555     24 431     21/06/94
5   YSCHL2825  U10400     18 715     21/06/94
6   YSCH8082   U10399     28 124     21/06/94
7   YSCH8179   U00062     44 113     19/05/94
8   YSCH8025   U00061     27 816     18/05/94
9   YSCH9205   U10556     39 203     21/06/94
10  YSCH9332   U00060     36 176     18/05/94
11  YSCH8263   U00059     39 954     11/05/94
12  YSCH9315   U10398     30 350     21/06/94
13  YSCH9666   U10397     39 057     21/06/94
14  YSCH9986   U00027     41 663     26/02/94
15  YSCH9186   U00028     10 801     26/02/94
16  YSCH9998   U00030     35 600     26/02/94
17  YSCH9177   U00029     52 664     26/02/94
    overlaps              -6 652     01/09/94
                         --------------------
                         562 638 bp  31/12/94


---------------------------------------------------------------------------


CHR IX (Public sequences) :  BARRELL  439 885 bp

The complete sequence of chr IX has been submitted in one piece :

Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1    chr IX    Z47047    439 885     22/12/94
                         --------------------
                         439 885 bp  31/12/94

The list of the 14 separate cosmids :

Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1     9877     Z37996     17 731     06/10/94
2     9167     Z37997     17 421     06/10/94
3    L4357     Z38062     75 317     12/10/94
4    L5610     Z38060     37 730     12/10/94
5     9168     Z38113     42 793     12/10/94
6     9687     Z38059     21 431     12/10/94
7     4554     Z38061     19 817     15/10/94
8     9150     Z38125     43 504     18/10/94
9     9910     Z46728     25 761     20/11/94
10    8277     Z46833     26 142     30/11/94
11    9905     Z46861     33 954     02/12/94
12    3299     Z46881     30 977     05/12/94
13    8224     Z46902      8 956     07/12/94
14    9402     Z46921     38 990     09/12/94
        overlaps            -639     22/12/94
                         --------------------
                         439 885 bp  31/12/94


---------------------------------------------------------------------------


CHR X (Public sequences) :  GALIBERT  120 853 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1   Zimmermann  X77087     9 464     02/08/94
2   Galibert    L26347     8 236     07/08/94
3   Hilger      Z34098    40 257     03/06/94
4   Hilger      Z34288    17 137     09/06/94
5   Foury       X77688    36 016     22/09/94
6   Zimmermann  X77923     9 743     
                         --------------------
                         120 853 bp  31/12/94


---------------------------------------------------------------------------


CHR XI (Public sequences) :  DUJON  666 448 bp


The complete sequence can be retrieved by FTP to the following addresses :

ftp.ebi.ac.uk (193.62.196.6)                  (/pub/databases/yeast/chrXI)
ftp.mips.embnet.org (141.61.66.2)                ([anonymous.yeast.chrXI])
genome-ftp.stanford.edu (36.69.0.79)         (/pub/yeast/genome_seq/chrXI)
ncbi.nlm.nih.gov (130.14.25.1)                   (/repository/yeast/chrXI)


---------------------------------------------------------------------------


CHR XII RIGHT (Public sequences) :  JOHNSTON  186 339 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1     8167     U14913     38 868     23/09/94
2     8479     U17244     32 494     23/11/94
3     9328     U17245     14 827     23/11/94
4     9470     U17246     40 738     23/11/94
5    L2142     U17247     19 198     23/11/94
6     8003     U17243     40 214     07/12/94
                         --------------------
                         186 339 bp  31/12/94


---------------------------------------------------------------------------


CHR XII LEFT (Public sequences) :  HOHEISEL      0 bp



Nr   Cosmid   Accession   Size      Date
              Number      (bp)

-      -          -        -          -
                         --------------------
                               0 bp  31/12/94

---------------------------------------------------------------------------



CHR XIII (Public sequences) :  BARRELL  162 137 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1     9514     X80836     13 841     09/08/94
2     8175     X80835     15 581     09/08/94
3     9745     Z38114     19 975     15/10/94
4     8248     Z46373     25 135     27/10/94
5     8337     Z46659     34 506     15/11/94
6     9725     Z46660     32 148     15/11/94
7     9958     Z46729     20 951     20/11/94
                         --------------------
                         162 137 bp  31/12/94


---------------------------------------------------------------------------


CHR XIV (Public sequences) :  PHILIPPSEN  76 172 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1   Volckaert  X77395     23 901     01/06/94
2   Volckaert  X77114      8 887     02/08/94
3   Foury      X78898     35 161     24/11/94
4   Foury      X83226      8 223     15/12/94
                         --------------------
                          76 172 bp  31/12/94


---------------------------------------------------------------------------


CHR XV (Public sequences) :  DUJON  39 307 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1   Schweizer  X75449     10 270     01/11/94
2   Schweiser  X83121     39 307     07/12/94
    overlap with 1       -10 270     07/12/94
                         --------------------
                          39 307 bp  31/12/94


---------------------------------------------------------------------------


CHR XVI RIGHT 1 (Public sequences) :  BARRELL      0 bp



Nr   Cosmid   Accession   Size      Date
              Number      (bp)

-      -          -        -          -
                         --------------------
                               0 bp  31/12/94

---------------------------------------------------------------------------



CHR XVI RIGHT 2 (Public sequences) :  JOHNSTON      0 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

-      -          -        -          -
                         --------------------
                               0 bp  31/12/94


---------------------------------------------------------------------------


CHR XVI LEFT 1 (Public sequences) :  BUSSEY  10 450 bp


Nr   Cosmid   Accession   Size      Date
              Number      (bp)

1    Bussey    L33835     10 450     21/06/94
                         --------------------
                          10 450 bp  31/12/94


---------------------------------------------------------------------------


CHR XVI LEFT 2 (Public sequences) :  GOFFEAU      0 bp



Nr   Cosmid   Accession   Size      Date
              Number      (bp)

-      -          -        -          -
                         --------------------
                               0 bp  31/12/94

---------------------------------------------------------------------------



More information about the Yeast mailing list