yeast codon usage preferences chart?

Frans Hochstenbach fransh at Box-f.nih.gov
Wed Apr 3 18:43:40 EST 1996


In article <199604031259.HAA01127 at borduas.nlm.nih.gov>,
francis at NCBI.NLM.NIH.GOV wrote:
 
> I found one at the Stanford WWW page, and I think it's the same as that
> present in Indiana, but they are both "old", which is from March 1990
> (not 1993 as indicated on that page), and only used 435 "gene" to 
> build it
...(snip)
> gb93   7759      20193939       Dec 95

Dear francis,

What about Yasukazu Nakamura's page entitled
'Codon Usage Tabulated from GenBank Rel. 93'

at URL http://www.dna.affrc.go.jp/~nakamura/CUTG.html

with the budding data at URL
http://www.dna.affrc.go.jp/nakamura-bin/showcodon.cgi?pos=878535

and the fission data at URL
http://www.dna.affrc.go.jp/nakamura-bin/SpSearch.cgi?species=pombe

Yours, ---Frans.

P.S. I am still looking forward to the update of your homepage at URL
http://www.nih.gov/sigs/yeast/ouellette.html
(Last modified on June 7, 1995.)



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