large ORFs

Marek Tchorzewski TCHORZ at BIOTOP.UMCS.LUBLIN.PL
Tue Feb 18 09:32:20 EST 1997


On 18 Feb 97 at 12:58, Jaap Venema wrote:

> Dear colleagues,
> 
> is anybody aware of a method to screen for and select all the large
> (putative) ORFs in the yeast genome database (let's say  > 8 kb)? Also, if
> somebody has got such a list or other related information, I would be very
> interested. Any help is greatly appreciated.
> 
> Best wishes,
> 
> Jaap Venema
> 
> email venema at chem.vu.nl
> 
> 
Hi
Try to use statistical methods:
-positional preferences of the bases within codons
-codon bias
-TestCode analysis (Frickett's statistic)
-Correspondence analysis

Marek Tchorzewski
Univ. of Maria Curie-Sklodowska
Dept. of Molec. Biol.
Poland



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