UTR search

Cathy Ball ball at GENOME.STANFORD.EDU
Tue Jul 15 14:06:18 EST 1997


Dear Brian,

Sacch3D (the 3-D structure database from SGD) offers a pattern search of
either ORFs or UTRs.  You can search for a degenerate sequence 500 bp,
1000 bp or 2000 bp upstream of ORFs.  As yet, the program does not permit
mismatches, but that will probably change soon. 

The URL for Pattern Matching is: 

http://genome-www.stanford.edu/Sacch3D/patmatch.html

If you have questions about the program, contact the Sacch3D curator and
author of the program, Steve Chervitz (sac at genome.stanford.edu), or
contact one of the SGD curators (yeast-curator at genome.stanford.edu). 

Yours,
 
Cathy
 
*****************************************************
 Catherine Ball, Database Curator
 Saccharomyces Genome Database
 Stanford University Med. Ctr.
 Department of Genetics
 Stanford, CA 94305-5120 USA
 phone: 415-725-8956  fax: 415-723-7016
 e-mail:   ball at genome.stanford.edu
 WWW:   http://genome-www.stanford.edu/
*****************************************************

On Tue, 15 Jul 1997, Brian David Lang wrote:

> Does anyone know of any way to do sequence searches of yeast UTRs?
> 
> 
> *************
> 
> Brian D. Lang
> 
> Emory University
> Department of Genetics
> 404-727-2487
> 
> 
> 



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