New Saccharomyces Sequences 09/04/97

SGD Sequences yeast-seq at GENOME.STANFORD.EDU
Thu Sep 4 06:22:02 EST 1997


=========== Updated Sequence Features/Annotations  =============

SCU36624    U36624 U00094    27120bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI, left arm cosmid 9901.
    YPL030W; Ypl030wp; SUV3; Suv3p: mitochondrial ATP-dependent DExH box
     helicase; ERG10; Erg10p: acetoacetyl CoA thiolase; YPL027W; Ypl027wp;
     SKS1; SKS1p: Serine/threonine protein kinase; YPL025C; Ypl025cp;
     YPL024W; Ypl024wp; YPL023C; Ypl023cp; RAD1; Rad1p: UV endonuclease;
     YPL021W; Ecm23p; YPL020C; Ypl020cp; YPL019C; Ypl019cp; CTF19; Ctf19p;
     YPL017C; Ypl017cp.

SCU39205    U39205 U00094    37947bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI, left arm, cosmid 8460.
    aldehyde dehydrogenase; geranylgeranyl pyrophosphate homolog; BTS1;
     Bts1p: geranylgeranyl diphosphate synthase; YPL068C; Ypl068cp; YPL067C;
     Ypl067cp; YPL066W; Ypl066wp; VPS28; Vps28p; YPL064C; Ypl064cp; YPL063W;
     Ypl063wp; YPL062W; Ypl062wp; ALD6; Ald6p: Acetaldehyde dehydrogenase;
     YPL060W; Ypl060wp; tC(GCA)P1; YPL059W; Ypl059wp; PDR12; Pdr12p:
     multidrug resistance transporter; SUR1; Sur1p: Multicopy suppressor of
     cls2-2 and rvs161; YPL056C; Ypl056cp; YPL055C; Ypl055cp; LEE1; Lee1p;
     KTR6; Ktr6p; YPL052W; Ypl052wp; YPL051W; Ypl051wp.

SCU41849    U41849 U00094    35868bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI, left arm, cosmid 8204.
    SEC16; MOT1; ATP4; S.cerevisiae 60S ribosomal protein L21E homolog;
     S.cerevisiae Ybr197p homolog; GPI2; GCR1; YTA6; Sec16p; BRO1; Bro1p;
     SEN54; Sen54p: tRNA splicing endonuclease 54kD subunit; Mot1p: a
     putative helicase; YPL081W; Ypl081wp; YPL080C; Ypl080cp; URP1; Urp1p:
     Ribosomal protein; Atp4p: F(1)F(0)-ATPase complex delta subunit;
     YPL077C; Ypl077cp; Gpi2p; Gcr1p; Yta6p: Member of CDC48/PAS1/SEC18
     family of ATPases; YPL073C; Ypl073cp; YPL072W; Ypl072wp; YPL071C;
     Ypl071cp; YPL070W; Ypl070wp.

SCU43281    U43281 U00094    38669bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 8059/8047.
    YPL108W; Ypl108wp; YPL107W; Ypl107wp; SSE1; Sse1p: Member of the 70-kDa
     heat-shock protein family; YPL105C; Ypl105cp; MSD1; Msd1p: mitochondrial
     aspartyl-tRNA synthetase; YPL103C; Ypl103cp; YPL102C; Ypl102cp; YPL101W;
     Ypl101wp; YPL100W; Ypl100wp; YPL099C; Ypl099cp; YPL098C; Ypl098cp; MSY1;
     Msy1p: encodes a mitochondrial tyrosyl-tRNA synthetase; YPL096W;
     Ypl096wp; YPL095C; Ypl095cp; SEC62; Sec62p: yeast translocation protein;
     YPL093W; Ypl093wp; SSU1; Ssu1p: sulfite sensitivity protein; GLR1;
     Glr1p: glutathione reductase; RPS10B; Rps10bp; RLM1; Rlm1p: serum
     response factor-like protein; YPL088W; Ypl088wp; YPL087W; Ypl087wp;
     YPL086C; Ypl086cp.

SCU43503    U43503 U00094    38590bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 8209/8002.
    Aspergillus; Schizosaccharomyces pombe C18B11.10 homolog; NIP29; YPL126W;
     Ypl126wp; YPL125W; Ypl125wp; Nip29p: Nuclear import protein; YPL123C;
     Ypl123cp; TFB2; Tfb2p: TFIIH subunit; MEI5; Mei5p: Meiotic protein
     required for synapsis and meiotic recombination; VPS30; Vps30p; DBP1;
     Dbp1p: putative ATP-dependent DEAD box RNA helicase; YPL118W; Ypl118wp;
     IDI1; Idi1p: dimethylallyl diphosphate isomerase (IPP isomerase);
     YPL116W; Ypl116wp; BEM3; Bem3p; YPL114W; Ypl114wp; YPL113C; Ypl113cp;
     YPL112C; Ypl112cp; tM(CAU)P; tRNA-Met; CAR1; Car1p: arginase; YPL110C;
     Ypl110cp; YPL109C; Ypl109cp.

SCU43703    U43703 U00094    36484bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 9545.
    PXA1; KES1; S. cerevisiae snR17B U3-like small nuclear RNA homolog; S.
     cerevisiae 60S ribosomal protein L37a homolog; S. cerevisiae Kin4p
     homolog; MKK2; S. cerevisiae Yor50-20p, Yor50-19p homolog; S; cerevisiae
     Yor50-16p homolog; S. cerevisiae Yor50-17p homolog; S; cerevisiae
     Yor50-12p homolog; COX11; S. cerevisiae 60S ribosomal protein L1
     homolog; TBF1; Pisum sativum histone H1 homolog; Pxa1p: Peroxisomal
     ABC-transporter 1; YPL146C; Ypl146cp; Kes1p; YPL144W; Ypl144wp; RPL37A;
     Rpl37ap: 60S ribosomal protein L37a; YPL142C; Ypl142cp; YPL141C;
     Ypl141cp; Mkk2p: protein kinase; UME1; Ume1p: transcriptional modulator;
     YPL138C; Ypl138cp; YPL137C; Ypl137cp; YPL136W; Ypl136wp; YPL135W;
     Ypl135wp; YPL134C; Ypl134cp; YPL133C; Ypl133cp; Cox11p: Putative heme A
     biosynthetic enzyme; RPL1; Rpl1p: Ribosomal protein RPL1(YL3); YPL130W;
     Ypl130wp; YPL129W; Ypl129wp; Tbf1p: TTAGGG repeat binding factor; HHO1;
     Hho1p: Histone H1.

SCU44030    U44030 U00094    33858bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI left arm from MNN9 to PHO85.
    MNN9; Mnn9p: Protein required for complex glycosylation; DIG1; Dig1p: Map
     kinase-associated protein; CAM1; Cam1p: Calcium and phospholipid binding
     protein homologous to translation elongation factor-1 gamma; YPL047W;
     Ypl047wp; YPL046C; Ypl046cp; VPS16; Vsp16p: Vacuolar sorting protein;
     YPL044C; Ypl044cp; NOP4; Nop4p: RNA recognition motif-containing
     protein; SSN3; Ssn3p: a cyclin(SSN8)-dependent serine/threonine protein
     kinase; YPL041C; Ypl041cp; ISM1; Ism1p: mitochondrial isoleucyl-tRNA
     synthetase; MET31; Met31p: Zinc finger transcriptional regulator of
     sulfur amino acid metabolism; YPL038W; Ypl038wp; EGD1; Egd1p: GAL4
     enhancer protein; PMA2; Pma2p: Plasma membrane ATPase; YPL035C;
     Ypl035cp; YPL034W; Ypl034wp; YPL033C; Ypl033cp; YPL032C; Ypl032cp;
     PHO85; Pho85p: Protein kinase homolog; negative transcriptional
     regulator; YPL030W; Ypl030wp.

U33335      U33335 U00094    35550bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI, left arm cosmid 9758.
    SWI1; Swi1p: contains zinc-finger, global transcription activator,
     involved in the regulation of; Swi1p: contains zinc-finger, global
     transcription activator, involved in the regulation of expression of
     many genes, includes ADH1, ADH2, GAL1, HO,; Swi1p: contains zinc-finger,
     global transcription activator, involved in the regulation of expression
     of many genes, includes ADH1, ADH2, GAL1, HO, INO1 and SUC2; HST2;
     Hst2p; YPL014W; Ypl014wp; YPL013C; Ypl013cp; YPL012W; Ypl012wp; YPL011C;
     Ypl011cp; YPL010W; Ypl010wp; YPL009C; Ypl009cp; CHL1; Chl1p: kinetochore
     protein in the DEAH box family; YPL007C; Ypl007p; YPL006W; Ypl006wp;
     YPL005W; Ypl005wp; YPL004C; Ypl004cp; YPL003W; Ypl003wp; SNF8; Snf8p;
     HAT1; Hat1p.

YSCH8025    U00061 U00093    27816bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome VIII cosmid 8025.
    CUP1; Cup1p: Copper metallothionein; YHR054c; Yhr054cp; YHR056c;
     Yhr056cp; CYP2; Cyp2p: Peptidyl-prolyl cis-trans isomerase B; MED6;
     Med6p: RNA polymerase II transcriptional regulation mediator; YHR059w;
     Yhr059wp; VMA22; Vma22p; YHR061c; Yhr061cp; RPP1; Rpp1p: Nuclear
     ribonuclease P subunit; YHR063c; Yhr063cp; YHR064c; Yhr064cp; YHR065c;
     Yhr065cp; SSF1; Ssf1p; YHR067w; Yhr067wp; DYS1; Dys1p: Deoxyhypusine
     synthase; YHR069c; Yhr069cp; YHR070w; Yhr070wp; YHR071w; Yhr071wp;
     tF(GAA)H1; tRNA-Phe.

YSCH9186    U00028 U00093    10801bp    DNA      PLN      03-SEP-1997
    Saccharomyces cerevisiae chromosome VIII cosmid 9186.
    YHR180w; Yhr180wp; tT(UGU)H; tRNA-Thr; YHR181w; Yhr181wp; YHR182w;
     Yhr182wp; YHR183w; Yhr183wp; YHR184w; Yhr184wp.

YSCH9315    U10398 U00093    30349bp    DNA      PLN      03-SEP-1997
    Saccharomyces cerevisiae chromosome VIII cosmid 9315.
    YHR122w; Yhr122wp; EPT1; Ept1p: sn-1,2-diacylglycerol ethanolamine- and
     cholinephosphotranferase; NDT80; Ndt80p; tF(GAA)H2; tRNA-Phe; YHR125w;
     Yhr125wp; YHR126c; Yhr126cp; YHR127w; Yhr127wp; FUR1; Fur1p: Uracil
     phosphoribosyltransferase; ARP1; Arp1p: Actin-related protein, of the
     dynactin complex; YHR130c; Yhr130cp; YHR131c; Yhr131cp; ECM14; Ecm14p;
     YHR133c; Yhr133cp; YHR134w; Yhr134wp; YCK1; Yck1p: membrane-bound casein
     kinase I homolog; YHR136c; Yhr136cp; ARO9; Aro9p: Aromatic amino acid
     aminotransferase II; YHR138c; Yhr138cp; SPS100; Sps100p:
     Sporulation-specific wall maturation protein; YHR139C-A; Yhr139c-ap;
     YHR140w; Yhr140wp; MAK18; Mak18p: ribosomal protein.

YSCH9780    U10555 U00093    24431bp    DNA      PLN      03-SEP-1997
    Saccharomyces cerevisiae chromosome VIII cosmid 9780.
    MRP4; Mrp4p: Mitochondrial ribosomal protein; LAG1; Lag1p; YHL002w;
     RPL14B; Rpl14bp: Probable 60S ribosomal protein L14EB; YHR001w;
     Yhr001wp; QCR10; Qcr10p: 8.5 kDa subunit of the quinol cytochrome
     oxidoreductase complex; YHR002w; Yhr002wp; YHR003c; Yhr003cp; YHR004c;
     Yhr004cp; GPA1; Gpa1p: Alpha subunit of trimeric guanine nucleotide
     binding protein; MRS11; Mrs11p; tT(AGU)H; tRNA-Thr; YHR006w; Yhr006wp;
     ERG11; Erg11p: Cytochrome P450 L1 (14DM) (Lanosterol 14-alpha
     demethylase).

YSCH9986    U00027 U00093    41664bp    DNA      PLN      29-AUG-1997
    Saccharomyces cerevisiae chromosome VIII cosmid 9986.
    YHR162w; Yhr162wp; SOL3; Sol3p; DNA2; Dna2p: DNA replication helicase;
     PRP8; Prp8p: RNA splicing factor; CDC23; Cdc23p: cell cycle protein;
     YHR167W; Yhr167wp; YHR168w; Yhr168wp; YHR169w; Yhr169wp; NMD3; Nmd3p:
     Putative Upf1p interacting protein; YHR171w; Yhr171wp; SPC97; Spc97p:
     97kDa spindle pole body component; YHR173c; ENO2; Eno2p: Enolase 2;
     2-phosphoglycerate dehydratase; YHR175w; Yhr175wp; YHR176w; Yhr176wp;
     YHR177w; Yhr177wp; STB5; Stb5p: SIN3 binding protein; OYE2; Oye2p:
     NAD(P)H oxidoreductase (Old Yellow Enzyme).

YSCH9998    U00030 U00093    35600bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome VIII cosmid 9998.
    YHR185c; Yhr185cp; tRNA-Val; tV(CAC)H; YHR186c; Yhr186cp; IKI1; Iki1p;
     YHR188c; Yhr188cp; YHR189w; Yhr189wp; ERG9; Erg9p: Squalene synthetase;
     CTF8; Ctf8p; YHR192w; Yhr192wp; EDG2; YHR194w; Yhr194wp; YHR195w;
     Yhr195wp; YHR196w; Yhr196wp; YHR197w; Yhr197wp; YHR198c; Yhr198cp;
     YHR199c; Yhr199cp; SUN1; Sun1p: Proteasome subunit; PPX1; Ppx1p:
     Cytosolic exopolyphosphatase; YHR202w; Yhr202wp; RPS7A; Rps7ap:
     Ribosomal protein S7; YHR204w; Yhr204wp.

YSCP8283    U32445 U00094    39141bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 8283.
    YPR098C; Ypr098cp; YPR099C; Ypr99cp; YPR100W; Ypr100wp; YPR101W;
     Ypr101wp; YPR102C; Ypr102cp; PRE2; Pre2p: Proteasome subunit; FHL1;
     Fhl1p: Putative transcriptional regulator of rRNA processing genes;
     YPR105C; Ypr105cp; YPR106W; Ypr106wp; YPR107C; Ypr107cp; YPR108W;
     Ypr108wp; tT(UGU)P; YPR109W; Ypr109wp; RPC40; Rpc40p: RNA Polymerases I
     and III 40 kD subunit (Swiss Prot. accession number P07703); DBF20;
     Dbf20p: Ser/Thr protein kinase (Swiss Prot. accession number P32328);
     YPR112C; Ypr112cp; PIS1; Pis1p: phosphatidylinositol synthase; YPR114W;
     Ypr114wp; YPR115W; Ypr115wp; YPR116W; Ypr116wp; YPR117W; Ypr117wp.

YSCP9325    U25840 U00094    17147bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 9325.
    ORC4; Orc4p: 56 kDa subunit of origin recognition complex(ORC); TIF3;
     Tif3p: Translation initiation factor eIF-4B; YPR164W; Ypr164wp; RHO1;
     Rho1: Rho sub-family of Ras proteins (Swiss Prot. accession number
     P06780); MRP2; Mrp2p: 14kDa mitochondrial ribosomal protein; MET16;
     Met16p: 3'-phosphoadenylylsulfate reductase (PAPS reductase, Swiss Prot.
     accession number P18408); NUT2; Nut2p; YPR169W; Ypr169wp.

YSCP9513    U51033 U00094    44456bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 9513.
    SPE3; Spe3p: putrescine aminopropyltransferase(spermidine synthase);
     YPR070W; Ypr070wp; YPR071W; Ypr071wp; tS(UGA)P; YPR076W; Ypr072wp; LTP1;
     Ltp1p: 18-kDa phosphotyrosine phosphatase; TKL1; Tkl1p: Transketolase 1;
     YPR075C; Ypr075cp; Ypr076wp; YPR077C; Ypr077cp; YPR078C; Ypr078cp;
     YPR079W; Ypr079wp; TEF1; Tef1p: Elongation factor 1-alpha; YPR081C;
     Ypr081cp; YPR082C; Ypr082cp; YPR083W; Ypr083wp; YPR084W; Ypr084wp;
     YPR085C; Ypr085cp; SUA7; Sua7p: Transcription initiation factor IIB
     (Swiss Prot. accession number P29055); YPR087W; Ypr087wp; SRP54; Srp54p:
     Signal recognition particle 54 kd subunit (Swiss Prot. accession number
     P20424); YPR089W; Ypr089wp; YPR090W; Ypr090wp; YPR091C; Ypr091cp;
     YPR092W; Ypr092wp; YPR093C; Ypr093cp; YPR094W; Ypr094wp; YPR095C;
     Ypr095cp; YPR096C; Ypr096cp; YPR097W; Ypr097wp.

YSCP9584    U28371 U00094    32901bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 9584.
    YPR154W; Ypr154wp; NCA2; Nca2p: Expression regulator of ATP synthase;
     YPR156C; Ypr156cp; YPR157W; Ypr157wp; YPR158W; Ypr158wp; tA(AGC)P; KRE6;
     Kre6p: beta-Glucan synthesis-associated protein (killer toxin-resistance
     protein 6); tG(GCC)P2; GPH1; Gph1p: Glycogen phosphorylase (Swiss Prot.
     accession number P06738); SGV1; Protein kinase (Swiss Prot. accession
     number P23293).

YSCP9642    U40828 U00094    25164bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 9642.
    YPR118W; Ypr118wp; tK(UUU)P; CLB2; Clb2p: G2/Mitotic-specific cyclin 2
     (Swiss Prot. accession number P24869); CLB5; Clb5p: G1/S-phase cyclin 5
     (Swiss Prot. accession number P30283); tC(GCA)P2; YPR121W; Ypr121wp;
     AXL1; Axl1p: Putative homolog of human insulin-degrading endoprotease;
     YPR123C; Ypr123cp; CTR1; Ctr1p: high affinity copper transporter;
     YPR125W; Ypr125wp; YPR126C; Ypr126cp; YPR127W; Ypr127wp.

YSCP9659    U40829 U00094    43281bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 9659.
    YPR128C; Ypr128cp; SCD6; Scd6p: Multicopy suppressor of clathrin
     deficiency; YPR130C; Ypr130cp; YPR131C; Ypr131cp; RPS28B; Rps28bp: 40S
     ribosomal protein S28 (Swiss Prot. accession number P32827); YPR133C;
     Ypr133cp; MSS18; Mss18p: Mitochondrial splicing protein (Swiss Prot.
     accession number P05893).; CTF4; Ctf4p: DNA Polymerase alpha-binding
     protein (Swiss Prot. accession number Q01454); YPR136C; Ypr136cp;
     YPR137W; Ypr137wp; tN(GUU)P; YPR138C; Ypr138cp; YPR139C; Ypr139cp;
     YPR140W; Ypr140wp; KAR3; Kar3p: Kinesin-like protein essential for
     nuclear fusion during mating (Swiss Prot. accession number; Kar3p:
     Kinesin-like protein essential for nuclear fusion during mating (Swiss
     Prot. accession number P17119).; YPR142C; Ypr142cp; YPR143W; Ypr143wp;
     tI(AAU)P1; YPR144C; Ypr144cp; SNR45; YPR145W; Asn1p: Asparagine
     synthetase; YPR146C; Ypr146cp; YPR147C; Ypr147cp; YPR148C; Ypr148cp;
     NCE2; Nce2p; YPR150W; Ypr150wp; YPR151C; Ypr151cp; YPR152C; Ypr152cp;
     YPR153W; Ypr153wp.

YSCP9705    U25842 U00094    26493bp    DNA      PLN      02-SEP-1997
    Saccharomyces cerevisiae chromosome XVI cosmid 9705.
    YPR171W; Ypr171wp; YPR172W; Ypr172wp; VPS4; Vps4p; YPR174C; Ypr174cp;
     DPB2; Dpb2p: DNA Polymerase epsilon, subunit B; BET2; Bet2p: Protein
     Geranyl-geranyltransferase beta subunit (Swiss Prot. accession number
     P20133; P32433); YPR177C; Ypr177cp; PRP4; Prp4p: U4/U6 small nuclear
     ribonucleoprotein Prp4p (Swiss Prot. accession number P20053); YPR179C;
     Ypr179cp; YPR180W; Ypr180wp; SEC23; Sec23p: cytoplasmic
     GTPase-activating protein; SMX3; Smx3p: Sm or Sm-like snRNP protein;
     DPM1; Dpm1p: Dolichol-phosphate mannose synthase; YPR184W; Ypr184wp;
     YPR185W; Ypr185wp.


Please note that new sequences take about a week to appear in SGD.  To
obtain any of the yeast GenBank sequences use the NCBI retrieve e-mail
server, retrieve at ncbi.nlm.nih.gov - send the word help and
instructions will be returned.
  World Wide Web links for sequences:
     Only Yeast:  http://genome-www.stanford.edu/cgi-bin/genbank_search
  BLAST & FASTA:  http://genome-www.stanford.edu/Saccharomyces/
 NCBI (GenBank):  http://www.ncbi.nlm.nih.gov/Web/Search/
     EBI (EMBL):  http://www.ebi.ac.uk/ebi_docs/embl_db/ebi/topembl.html
           DDBJ:  http://ftp2.ddbj.nig.ac.jp:8000/cgi-bin/getent/



More information about the Yeast mailing list